Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30234
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 31 0.87
10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973... 31 1.2
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 31 1.2
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 30 1.5
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 30 2.0
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 29 2.7
11_06_0690 + 26303733-26306540 29 3.5
11_06_0610 - 25449085-25453284 29 3.5
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 3.5
02_04_0637 - 24651198-24651941 29 4.7
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 4.7
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.2
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639... 28 6.2
03_06_0037 + 31222963-31223886,31225172-31225786 28 6.2
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 28 6.2
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 28 8.1
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 28 8.1
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 28 8.1
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 277 TGASARTLPSPAARCIPPPRLRTGLRGNI---AAQDPVIVHGHV-AFQTS 414
T A PSP PPP G+ G + A P +V G+V +F TS
Sbjct: 285 TAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTS 334
>10_06_0024 -
9733994-9734093,9734814-9734870,9734954-9735040,
9736438-9736982,9737086-9737271
Length = 324
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Frame = +1
Query: 52 AAGIRHQAHCTVSWSSAH---LNLRCATLKLTASTWVNFAV---FSETVTTSLTMTSGYL 213
++G+ AH V W+ H + + A L + W NFAV ++ T +G+
Sbjct: 163 SSGVAAVAHVAVCWALVHKAGMGSKGAALSGAVTYWTNFAVLAFYARLSGACKTTWTGFS 222
Query: 214 MER-SALRKASSVTRPSGPQLSTGASARTLPSPAARCIPPPRLRTGL 351
M LR+ + + PS + S+ + + +P P+L T +
Sbjct: 223 MNAFRELRRFTELAVPSAMMVCLEWSSFEILVLLSGILPNPQLETAV 269
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 264 PAAVHRCKRPNTPITSC-TMHPSPPPANRSSGEYR 365
P HRC P+ +C T P+PP SS E R
Sbjct: 328 PRLTHRCSTTTQPLPTCGTPAPAPPAGQPSSAEDR 362
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 265 PQLSTGASARTLPSPAARCIPPPRLRTG-LRGNIA 366
PQ + G+ A L + R PPPRLRT L G +A
Sbjct: 169 PQATAGSPAARLAARRLRTSPPPRLRTSRLAGAVA 203
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 199 TSGYLMERSALRKASSVTRPSGPQLSTGASARTLPSPA-ARCIPPPRLRTG--LRGNIAA 369
+S L S+ +A++V+ P S A+A +LPSP+ A C PP R LR + A
Sbjct: 6 SSSLLAAASSSSRAAAVSARRAPSASPAAAA-SLPSPSRASCAPPLRASAARTLRSRVVA 64
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +3
Query: 315 TMHPSPPPANRSSGEYRRSGPCHCS---WT 395
T PPP NR +R S PC C+ WT
Sbjct: 127 TSDRQPPPMNRRMRHHRASAPCPCADVLWT 156
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 229 LRKASSVTRPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVIVH 390
L S+ P L T + + S A PPP LR L G + P+IV+
Sbjct: 695 LAPEGSLMAAQSPNLCTLDPEKEVESEAGIFEPPPALRAQLSGPVQCGSPLIVY 748
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 256 PSGPQLSTGASARTLPSPAARCIPPPRLR 342
PS P+ S+ + ++LP PA +PPP ++
Sbjct: 1106 PSVPKASSPPTEKSLPPPATVSLPPPTVK 1134
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 282 CKRPNTPITSCTMHPSPPPA 341
CK PI+ CT P+PPPA
Sbjct: 104 CKVQAPPISQCTAVPTPPPA 123
>02_04_0637 - 24651198-24651941
Length = 247
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/83 (32%), Positives = 37/83 (44%)
Frame = +1
Query: 124 TLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRPSGPQLSTGASARTLP 303
TL+L AS + V E TT G L+ +A+ + RPS + S A R +P
Sbjct: 101 TLRL-ASQRADMGVCFEAGTTVAVYYGGVLLAGAAVPALCAGPRPSAEEESVVAWGRGVP 159
Query: 304 SPAARCIPPPRLRTGLRGNIAAQ 372
P + RL LRG AA+
Sbjct: 160 VPR---LARDRLAGDLRGGGAAE 179
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 344 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAA 493
++ GG L LSL + + F+ A ++ + DAA DL ++GR + A
Sbjct: 1078 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKA 1127
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 291 PNTPIT-SCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSDKRVFTPSPAQTPLK 452
P P T SC+ HP+PPP + S S + P+ AQTP +
Sbjct: 77 PLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTR 131
>05_02_0078 -
6386278-6386291,6386462-6386594,6386721-6388613,
6391153-6391239,6391691-6391765,6393982-6394327,
6394428-6394450
Length = 856
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 417 HACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCSW*WECSGA 286
H + D S DR++S I +A GRD W E SGA
Sbjct: 288 HCNVYSDKSNEADRLVSAKISSHENKEASGRDIYDRWTSESSGA 331
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/61 (39%), Positives = 28/61 (45%)
Frame = -2
Query: 615 ISLFVGNFEFIAISDVPRLICISTLDAYVRKYXRENPVRARAAIPRPKSQASCKSLAASV 436
I VGN I DVPR I+ L VR+ R P A IP +S A C+ SV
Sbjct: 343 IDASVGNSRLITADDVPR---ITYLQCIVRETLRLYPA-APMLIPH-ESSADCEVGGYSV 397
Query: 435 P 433
P
Sbjct: 398 P 398
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 452 DLHEACDLGRGMAALALTGFSLXYFRTYASSVLMQIS--RGTSEIAMNSKFPTNRLILSY 625
D H CD G+ ++AL L+ ++ + +VL +I +A N F T+ LSY
Sbjct: 91 DAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENYGNLAFNLNFYTDVEDLSY 150
Query: 626 QLRQLN 643
R L+
Sbjct: 151 LQRHLD 156
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 287 APEHSHHQLHDAS-LPPACEQVFGGISP 367
A H HHQ+ A L P +Q FGG SP
Sbjct: 375 AEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 233 RSADLSIR*PEVIVRLVVTVSEKTAKFTQVEAVSFNVAHLKFRCA 99
RS D+ + P V L V++S+ +FTQ+ ++ + L+F A
Sbjct: 764 RSLDILAKGPPVCGDLAVSLSQAGPQFTQIMRCNYAIKALRFSTA 808
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 241 SSVTRPSGPQLSTGASARTLPSPAARCIPPPRL 339
+ + RP P +G+ + +PSP R P PRL
Sbjct: 491 NQILRPRSPYKFSGSRSLLVPSPRRRRRPAPRL 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,039,667
Number of Sequences: 37544
Number of extensions: 501455
Number of successful extensions: 2252
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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