Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30234
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    33   0.26 
AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical...    31   1.0  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.2  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    29   3.2  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   7.3  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   7.3  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    27   9.7  

>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 181 TTSLTMTSGYLMERSALRKASSVTRPSGPQLSTGASA-RTLPSPAARCIPPP 333
           T+S +MT+    E SA   A +    SG   ST ASA  T  S   RC PPP
Sbjct: 56  TSSSSMTASAASEVSAALSAMNRDISSGSGSSTAASATATTSSKLPRCTPPP 107


>AL031630-14|CAA20993.1|  185|Caenorhabditis elegans Hypothetical
           protein Y38H6C.15 protein.
          Length = 185

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 187 SLTMTSGYLMERSALRKASSVTRPSGPQLSTGASARTLPSPAARC-IPPPRLRT 345
           S+T + G+L+   A +K    T+P     S  +S +   + A  C +PPP LR+
Sbjct: 10  SITFSIGFLIMICAGKKKQKSTKPVVESTSASSSVKNGANAAPDCPVPPPGLRS 63


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 344  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 478
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 344  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 478
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
            and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 344  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 478
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
            protein M106.1 protein.
          Length = 1244

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 344  QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 478
            ++ GG   L  LSL + M  F+ A ++ +   DAA DL    ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 183 NEPYDDFRLPNGKICTSESEFGNATVWPAAVHRCKRPNTPITSCTMHPSPPPANRSSGEY 362
           +E Y +F   +  I  S S FGNA++ P A    KRP    T  T  P+  PA++    +
Sbjct: 2   SETYANFTFIDCSI-VSASRFGNASLCPKATKYGKRPPKSCTRPT-DPNNLPASKLESWF 59

Query: 363 RR 368
            R
Sbjct: 60  TR 61


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 256 PSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 384
           P+ P +++ + A   PSP A   PPPRL           +PV+
Sbjct: 263 PTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 162  GLLGDGNNEPYDDFRLPNGKI 224
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 142 STWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRPSGPQLSTGASAR-TLPSPAAR 318
           S+W  F    E + T+ T       +R+ LRK ++ T  S    ST  + + T  +  AR
Sbjct: 132 SSWKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTSTTTTEKPTTATTTAR 191

Query: 319 CIP 327
             P
Sbjct: 192 VTP 194


>Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical
           protein T24F1.4 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 246 GNATVWPAAVHRCKRPNTPITSCTMHPSPP 335
           G A  WP  VH    P T + +C  + SPP
Sbjct: 36  GAACDWPICVHGRANPATKLCNCHNYYSPP 65


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 154 NFAVFSETVTTSLTMTSGYLMERSALRKASSVT-RPSGPQLSTGASARTLPSPA 312
           ++ V   TV +S  + SG+    +  R A  +  RP+G Q +T +     PSPA
Sbjct: 248 DYCVAMSTVISS-PIPSGFWFSTNCTRPAKYICKRPAGVQSTTASPVTVAPSPA 300


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 379 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 296
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 208 YLMERSALRKASSVTRPSGPQLSTGASARTLP--SPAARCIPPPRLRTGLRGNIAAQDPV 381
           Y  +    R  S+ TR      S  +S+  +P  S  A  + PP+ RT +R N   Q P 
Sbjct: 273 YFEDTQRTRPQSTKTRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPR 332

Query: 382 IV 387
           +V
Sbjct: 333 VV 334


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 379 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 296
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 225 CTSESEFGNATVWPAAVHRCKRPNTPITSCTMHPSPPPAN 344
           CTS +  G+A VW  A   C    +  +   ++P+P PA+
Sbjct: 26  CTSYN--GSAFVWTPAATACSNVISDSSCAVLYPAPVPAD 63


>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
           protein Y25C1A.3 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 238 ASSVTRPSGPQLSTGASARTLPSPAARCIP 327
           +++ T   G   STG +  + P+PAA C P
Sbjct: 348 STATTAAGGSTASTGVTVASSPAPAAACEP 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,156
Number of Sequences: 27780
Number of extensions: 383704
Number of successful extensions: 1437
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)