Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30234
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.52 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.52 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.52 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.5  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 505 RILPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 606
           R+LP  L   C KCTD  +   I    +F V NK
Sbjct: 66  RVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 505 RILPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 606
           R+LP  L   C KCTD  +   I    +F V NK
Sbjct: 66  RVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 505 RILPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 606
           R+LP  L   C KCTD  +   I    +F V NK
Sbjct: 66  RVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 64  EFLQPGGSTSSRAA 23
           EFL PGGS   R A
Sbjct: 69  EFLNPGGSVKDRIA 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 445 GVCAGDGVNTRLSERRHVHEQ*QGPERRYSPEDLFAGG 332
           G+ A D     LS R       +GP+   +P +  AGG
Sbjct: 37  GIWADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGG 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 304  SPAARCIPPPRL 339
            +P  RC PPPR+
Sbjct: 1696 APNRRCPPPPRM 1707


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 508 ILPAVLPNVCVKCT 549
           +LP VL N C +CT
Sbjct: 56  LLPEVLNNHCNRCT 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,182
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)