Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30234
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 32 0.42
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.3
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 29 2.9
At2g43970.2 68415.m05468 La domain-containing protein contains P... 29 2.9
At2g43970.1 68415.m05467 La domain-containing protein contains P... 29 2.9
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 3.9
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 29 3.9
At3g02420.1 68416.m00229 expressed protein 29 3.9
At5g53660.1 68418.m06665 expressed protein 28 6.8
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 28 6.8
At4g29540.1 68417.m04213 bacterial transferase hexapeptide repea... 28 6.8
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 6.8
At2g33330.1 68415.m04085 33 kDa secretory protein-related contai... 28 6.8
At1g25180.1 68414.m03127 hypothetical protein 28 6.8
At1g25112.1 68414.m03120 hypothetical protein 28 6.8
At1g25025.1 68414.m03116 hypothetical protein 28 6.8
At5g45573.1 68418.m05598 hypothetical protein 27 9.0
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 27 9.0
At3g08670.1 68416.m01007 expressed protein 27 9.0
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 296 HSHHQLHDASLPPACEQVFGGISPLRTLSLFMDMSPFRQACI 421
H HH HDAS+PP+ + SP + S S AC+
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASASASSAASSLPTACL 176
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 223 SALRKASSVTRPSGPQLSTGASARTLPSPA-ARCIPPP 333
SA R + S R P L A AR LP PA AR +PPP
Sbjct: 527 SAKRASGSRGRRPRPPLPPPARARPLPPPARARPMPPP 564
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 344 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGR 481
++ GG L LSL + + F+ A I+ + DAA DL ++GR
Sbjct: 1079 ELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGR 1124
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 169 SETVTTSLTMTSGYLMERSALRKAS-SVTRPSGPQLSTGASARTLPSPAARCIPPP 333
S + +TS T ++ + S LR S S P+ G + LP P IPPP
Sbjct: 21 SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPPLPQPPRMIIPPP 76
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 169 SETVTTSLTMTSGYLMERSALRKAS-SVTRPSGPQLSTGASARTLPSPAARCIPPP 333
S + +TS T ++ + S LR S S P+ G + LP P IPPP
Sbjct: 21 SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPPLPQPPRMIIPPP 76
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 344 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAA 493
++ GG L LSL + + F+ A ++ + DAA DL ++GR + A
Sbjct: 1082 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIRA 1131
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 291 PNTPITSCTMHPSPPPANRSSGEY 362
P+TP T+C PSPP + S Y
Sbjct: 58 PSTPTTACPPPPSPPSSGGGSSYY 81
>At3g02420.1 68416.m00229 expressed protein
Length = 348
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 175 TVTTSLTMTSGYLMERSALRKASSVTRPSGPQLSTGASARTL 300
T T++ + S E+ R + SV R SGP +TGA+ ++
Sbjct: 81 TATSASSTASSNANEQVRSRNSGSVPRTSGPSATTGATPSSM 122
>At5g53660.1 68418.m06665 expressed protein
Length = 365
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 456 KSLAASVPVTA*IHACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCS 310
K + AS+PV + S N++ ++GD+ P C + G+ C+
Sbjct: 76 KYMIASIPVPFDLLVSSPSSASPCNNKNIAGDLEPGRCRRTDGKKWRCA 124
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 267 AAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRSGP 377
AA ++ P P ++P PPP +++ Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223
>At4g29540.1 68417.m04213 bacterial transferase hexapeptide
repeat-containing protein similar to
UDP-acetylglucosamine acyltransferase [Acinetobacter sp.
M-1] GI:13358850; contains Pfam profile PF00132:
Bacterial transferase hexapeptide (three repeats)
Length = 334
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 312 CTMHPSPPPANRSS-GEYRR-SGPCHCSWTCRLSDKRVF 422
C++H S P++++ G+ G CH + C++ D+ +F
Sbjct: 152 CSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIF 190
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 285 KRPNTPITSCTMHPSPPPANRSS 353
KR +PIT H SPPP R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640
>At2g33330.1 68415.m04085 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 304
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +3
Query: 18 GRAALELVDPPGCRNSAPGSLYGLMVFCTSKLEVCYIEANGFYLGKLRGLL---GD-GNN 185
G A L DP G + A ++YGL+V ++K + GL GD NN
Sbjct: 40 GCARQRLSDPSGLYSQALSAMYGLLVTQSTKTRFYKTTTGTTSQTSVTGLFQCRGDLSNN 99
Query: 186 EPYDDF-RLP--NGKIC 227
+ Y+ RLP +GK+C
Sbjct: 100 DCYNCVSRLPVLSGKLC 116
>At1g25180.1 68414.m03127 hypothetical protein
Length = 258
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 RKASSVTRPSGP-QLSTGASARTLPSPAARCIPPPR 336
R A +TRP P S +S+ PS AAR + PP+
Sbjct: 15 RAARQLTRPKYPASRSVSSSSSAHPSQAARQLSPPK 50
>At1g25112.1 68414.m03120 hypothetical protein
Length = 258
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 RKASSVTRPSGP-QLSTGASARTLPSPAARCIPPPR 336
R A +TRP P S +S+ PS AAR + PP+
Sbjct: 15 RAARQLTRPKYPASRSVSSSSSAHPSQAARQLSPPK 50
>At1g25025.1 68414.m03116 hypothetical protein
Length = 258
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 RKASSVTRPSGP-QLSTGASARTLPSPAARCIPPPR 336
R A +TRP P S +S+ PS AAR + PP+
Sbjct: 15 RAARQLTRPKYPASRSVSSSSSAHPSQAARQLSPPK 50
>At5g45573.1 68418.m05598 hypothetical protein
Length = 195
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 223 SALRKASSVTRPSGPQLSTGASARTLPSPAARCIP--PPRL 339
S L +SS RP PQLS + R S + C PPRL
Sbjct: 137 SPLSSSSSSARPQAPQLSARPTPRLAISSSLDCKTHLPPRL 177
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 279 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRSG 374
R KRP +P+ C P PPP + S R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 241 SSVTRPSGPQLSTGASAR----TLPSPAARCIPPPRLRTG 348
SS RPS P + +SAR T S A+R P R+R G
Sbjct: 188 SSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPG 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,471
Number of Sequences: 28952
Number of extensions: 358263
Number of successful extensions: 1276
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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