Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30230
(603 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52434 Cluster: DNA-directed RNA polymerases I, II, and... 118 1e-25
UniRef50_Q5DAE1 Cluster: SJCHGC08401 protein; n=1; Schistosoma j... 81 3e-14
UniRef50_A5AWJ9 Cluster: Putative uncharacterized protein; n=1; ... 73 7e-12
UniRef50_A2XP07 Cluster: Putative uncharacterized protein; n=1; ... 71 2e-11
UniRef50_O81097 Cluster: RNA polymerase I, II and III 16.5 kDa s... 70 4e-11
UniRef50_Q5KBG4 Cluster: DNA-directed RNA polymerases i, ii, and... 62 1e-08
UniRef50_A0DFX5 Cluster: Chromosome undetermined scaffold_5, who... 57 3e-07
UniRef50_UPI00006CF85E Cluster: RNA polymerase Rpb8 family prote... 56 5e-07
UniRef50_A7ET20 Cluster: UDP-glucose 4-epimerase Gal10; n=12; Pe... 55 1e-06
UniRef50_A2D8U6 Cluster: RNA polymerase Rpb8 family protein; n=1... 54 2e-06
UniRef50_Q5CHU5 Cluster: RNA polymerase subunit 8c; n=2; Cryptos... 54 3e-06
UniRef50_Q92399 Cluster: DNA-directed RNA polymerases I, II, and... 53 6e-06
UniRef50_P20436 Cluster: DNA-directed RNA polymerases I, II, and... 52 8e-06
UniRef50_Q5BGY8 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q4P603 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_A6QU50 Cluster: DNA-directed RNA polymerases i; n=1; Aj... 50 4e-05
UniRef50_Q40944 Cluster: Putative RNA polymerase II subunit; n=1... 48 2e-04
UniRef50_Q2H0W3 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q7RN09 Cluster: DNA-directed RNA polymerases i, ii, and... 46 7e-04
UniRef50_A7AQQ3 Cluster: RNA polymerase subunit 8c, putative; n=... 46 0.001
UniRef50_Q4Q8I8 Cluster: RNA polymerase B subunit RPB8, putative... 45 0.001
UniRef50_UPI00004983D0 Cluster: RNA polymerase subunit Rpb8; n=1... 44 0.002
UniRef50_UPI00006CB425 Cluster: RNA polymerase Rpb8 family prote... 40 0.060
UniRef50_Q8SRJ5 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 35 1.7
UniRef50_Q4HFD8 Cluster: Helicase conserved C-terminal domain pr... 34 3.0
UniRef50_Q6BK91 Cluster: Similar to sp|Q06554 Saccharomyces cere... 33 3.9
UniRef50_A6GR44 Cluster: Probable epoxide hydrolase; n=1; Limnob... 33 5.2
UniRef50_Q7QYG2 Cluster: GLP_162_7496_7044; n=2; Giardia intesti... 33 5.2
UniRef50_Q0BPE1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_Q4RNC5 Cluster: Chromosome 2 SCAF15014, whole genome sh... 32 9.1
UniRef50_A0US72 Cluster: Putative uncharacterized protein precur... 32 9.1
UniRef50_A0KZ50 Cluster: Beta-hydroxyacyl-(Acyl-carrier-protein)... 32 9.1
>UniRef50_P52434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=19; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC3 - Homo
sapiens (Human)
Length = 150
Score = 118 bits (284), Expect = 1e-25
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +1
Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
P+ +R +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GGLLMRLQGDANNLHGFE
Sbjct: 77 PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFE 136
Query: 475 VDQHMYLLMKK*RF 516
VD +YLLMKK F
Sbjct: 137 VDSRVYLLMKKLAF 150
Score = 115 bits (276), Expect = 1e-24
Identities = 51/62 (82%), Positives = 59/62 (95%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N IYP+ LG+KFRLV+
Sbjct: 1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60
Query: 249 AT 254
A+
Sbjct: 61 AS 62
>UniRef50_Q5DAE1 Cluster: SJCHGC08401 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08401 protein - Schistosoma
japonicum (Blood fluke)
Length = 121
Score = 80.6 bits (190), Expect = 3e-14
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +1
Query: 328 FEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKK 507
F+YV GK+YRIE ++ ++ ASRL+ YVSFGGLLM+L GDA+NL GF V +H+YL++KK
Sbjct: 60 FDYVCYGKIYRIETQDSGVD-ASRLSCYVSFGGLLMQLTGDASNLQGFRVGKHLYLMIKK 118
Query: 508 *RF 516
F
Sbjct: 119 LAF 121
>UniRef50_A5AWJ9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 305
Score = 72.5 bits (170), Expect = 7e-12
Identities = 33/62 (53%), Positives = 43/62 (69%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
M LF DIF V +DP+GKKFD+VSR+ +SE M + LD+N+ IYPM GEKF + L
Sbjct: 1 MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60
Query: 249 AT 254
A+
Sbjct: 61 AS 62
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/61 (54%), Positives = 41/61 (67%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
M F+DIF V DP GKKFD+VSR+ SE + M + LD+N YP+Q GEKFR+VL
Sbjct: 189 MVETFFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVL 248
Query: 249 A 251
A
Sbjct: 249 A 249
Score = 63.3 bits (147), Expect = 4e-09
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = +1
Query: 307 RRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQH 486
R++ AD FEYVM GK+Y+I E P + YVSFGGLLM L GD N ++DQ
Sbjct: 102 RKSLADKFEYVMHGKLYKIS--EEGSGPNVKGVIYVSFGGLLMMLSGDPANTAKLDLDQR 159
Query: 487 MYLLMKK*RFSSII 528
+LL++K + ++I
Sbjct: 160 XFLLIRKFKDXTLI 173
>UniRef50_A2XP07 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 247
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
MA LFEDIF V +DP+GKKFDRVSR+ S+ F M + LD+ + +YPM G++F +VL
Sbjct: 68 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127
Score = 68.9 bits (161), Expect = 9e-11
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +1
Query: 307 RRNRADSFEYVMSGKVYRIEGD-EAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
R+ AD +EYVM GK+Y+I D + + + A ++ Y SFGGLL+ L+GD ++ FE+DQ
Sbjct: 179 RKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQ 238
Query: 484 HMYLLMKK 507
++LLM+K
Sbjct: 239 RLFLLMRK 246
>UniRef50_O81097 Cluster: RNA polymerase I, II and III 16.5 kDa
subunit; n=18; Eukaryota|Rep: RNA polymerase I, II and
III 16.5 kDa subunit - Arabidopsis thaliana (Mouse-ear
cress)
Length = 146
Score = 70.1 bits (164), Expect = 4e-11
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +3
Query: 78 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 251
+LFEDIF V +DP+GKKFD+V+R+ S + +M + LD+N+ +YP+ +G+KF L LA
Sbjct: 6 ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALA 63
Score = 66.1 bits (154), Expect = 6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Frame = +1
Query: 301 GNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVD 480
G ++ AD +EY+M GK+Y+I + P + L YVSFGGLLM L+GD ++ FE+D
Sbjct: 80 GAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAEL--YVSFGGLLMLLKGDPAHISHFELD 136
Query: 481 QHMYLLMKK 507
Q ++LLM+K
Sbjct: 137 QRLFLLMRK 145
>UniRef50_Q5KBG4 Cluster: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 157
Score = 61.7 bits (143), Expect = 1e-08
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 72 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 251
+ ++F+D F V +D +GKKFDRVSR+ S S M L LDI + +YP++ E F L LA
Sbjct: 5 SNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEQSETFTLTLA 64
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +1
Query: 259 EGKRIP*RRRMEPSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMR 438
EG + +R + + A+ ++YVM GKV + AY SFGGLLM
Sbjct: 86 EGSEVRRVKRELWRSHEQGLAEDYDYVMYGKVGK-----------GGSTAYFSFGGLLMA 134
Query: 439 LQGDANNLHGFEVDQHMYLLMKK 507
L+G +L G V +++YLLM+K
Sbjct: 135 LRGSYRHLAGVVVGENVYLLMRK 157
>UniRef50_A0DFX5 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 148
Score = 57.2 bits (132), Expect = 3e-07
Identities = 23/56 (41%), Positives = 41/56 (73%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
L ++ F V+D+D G+ F RVSR+ C+S+S ++D+ LD+N IYP+ G ++R+++
Sbjct: 8 LIDEYFKVEDIDQAGQSFKRVSRIKCKSKSGEVDMELDVNIDIYPIDKGSEYRVLI 63
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +1
Query: 322 DSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLM 501
+ F+Y M G+V+++ D+ M + + SFGGL+++L G + L F DQ +YLLM
Sbjct: 91 EKFQYAMFGRVFKMIKDQNKM-----INVFASFGGLILKLSGKSEELDKFADDQRVYLLM 145
Query: 502 KK 507
+K
Sbjct: 146 RK 147
>UniRef50_UPI00006CF85E Cluster: RNA polymerase Rpb8 family protein;
n=1; Tetrahymena thermophila SB210|Rep: RNA polymerase
Rpb8 family protein - Tetrahymena thermophila SB210
Length = 144
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +1
Query: 304 NRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
+R + D FEYVM GK+Y + D A ++ + SFGGLLM++ G +L F VD
Sbjct: 80 DRESIKDKFEYVMHGKIYNMNSDNKA----KTVSIFASFGGLLMKVSGKDEDLKNFNVDS 135
Query: 484 HMYLLMK 504
+Y+L++
Sbjct: 136 RIYILIR 142
>UniRef50_A7ET20 Cluster: UDP-glucose 4-epimerase Gal10; n=12;
Pezizomycotina|Rep: UDP-glucose 4-epimerase Gal10 -
Sclerotinia sclerotiorum 1980
Length = 151
Score = 54.8 bits (126), Expect = 1e-06
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +1
Query: 301 GNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVD 480
G AD F+YV GK+Y+ E E + + AY+SFGGLLM L+G L VD
Sbjct: 88 GGEATLADMFDYVCHGKIYKFEDQENS----DLIKAYISFGGLLMGLEGPYKKLTPLRVD 143
Query: 481 QHMYLLMKK 507
++YLL+KK
Sbjct: 144 -YVYLLIKK 151
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESE-SFKMDLILDINSWIYPMQLGEKFRLVLAT 254
LF++ F V ++D KK+ RV R+ S + ++LDIN+ +YP+ +G+ R+VLAT
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELYPLAVGDNIRVVLAT 65
>UniRef50_A2D8U6 Cluster: RNA polymerase Rpb8 family protein; n=1;
Trichomonas vaginalis G3|Rep: RNA polymerase Rpb8 family
protein - Trichomonas vaginalis G3
Length = 146
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/63 (42%), Positives = 37/63 (58%)
Frame = +1
Query: 319 ADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLL 498
A S+EY+M GKVY E +R YVS+GGLLM L GD N + G + + +YLL
Sbjct: 85 AASYEYIMHGKVYNYE----EQPETNRATVYVSYGGLLMSLTGDRNTIAGIQRGKEVYLL 140
Query: 499 MKK 507
+ +
Sbjct: 141 ISR 143
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/71 (32%), Positives = 40/71 (56%)
Frame = +3
Query: 96 FNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATR*GKTDT 275
F +DP+GK+FD VSR+ ++ +L+LD N +IY ++ + F+L ++T+ +
Sbjct: 8 FRCTAVDPDGKQFDDVSRIKATTDEGDYELVLDYNCFIYEIKQDQLFQLNISTQLHSDEA 67
Query: 276 LTAENGTLWKP 308
AE W P
Sbjct: 68 SRAEEH--WHP 76
>UniRef50_Q5CHU5 Cluster: RNA polymerase subunit 8c; n=2;
Cryptosporidium|Rep: RNA polymerase subunit 8c -
Cryptosporidium hominis
Length = 144
Score = 53.6 bits (123), Expect = 3e-06
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +1
Query: 322 DSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLM 501
D ++YVM GK+YR+E ++ R + Y SFGGLLM L D N + F +D +Y L+
Sbjct: 83 DQYDYVMYGKIYRVEEKQS-----DRRSLYASFGGLLMSLTADKNLVGDFSLDMRLYCLV 137
Query: 502 KK 507
++
Sbjct: 138 RR 139
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATR 257
LFED F + +D KFDR+ R+ S F DLILDIN+ ++P++ E + L+++
Sbjct: 7 LFEDRFVINSVD--SGKFDRIGRIRGRSVGFDADLILDINNELFPVREKESLYIGLSSQ 63
>UniRef50_Q92399 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=1; Schizosaccharomyces pombe|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC3 - Schizosaccharomyces pombe (Fission yeast)
Length = 125
Score = 52.8 bits (121), Expect = 6e-06
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +1
Query: 304 NRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
N + ++ +Y+M GKVYR+E EA E +++ YVSFGGLLM ++G L+ +D
Sbjct: 64 NSPDLKEAADYIMYGKVYRVE--EAKDE---KVSVYVSFGGLLMAIEGSHRKLYRLSLD- 117
Query: 484 HMYLLMKK 507
H+YLL+++
Sbjct: 118 HVYLLLRR 125
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +3
Query: 78 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATR 257
VL ++IF V +D + K+ RVSR+ S M+L LDINS IYP++ F L + +
Sbjct: 5 VLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSN 62
Query: 258 *GKTD 272
D
Sbjct: 63 LNSPD 67
>UniRef50_P20436 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=11; Saccharomycetales|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC3 - Saccharomyces cerevisiae (Baker's yeast)
Length = 146
Score = 52.4 bits (120), Expect = 8e-06
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +1
Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
P R+ AD ++YVM G Y+ E E + + +A Y SFGGLLMRL+G+ NL+ +
Sbjct: 82 PQAGDRSLADDYDYVMYGTAYKFE--EVSKD---LIAVYYSFGGLLMRLEGNYRNLNNLK 136
Query: 475 VDQHMYLLMKK 507
++ YLL+++
Sbjct: 137 -QENAYLLIRR 146
Score = 39.9 bits (89), Expect = 0.045
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESES-FKMDLILDINSWIYPMQLGEKFRLV 245
M+ LF+DIF V ++DP ++++V R+ S + + L LDIN ++P+ + +
Sbjct: 1 MSNTLFDDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVT 58
Query: 246 LATR*GKTDTLTAENGTL--WKPKKS 317
+A+ DT ++ W+P ++
Sbjct: 59 IASSLNLEDTPANDSSATRSWRPPQA 84
>UniRef50_Q5BGY8 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 128
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +3
Query: 78 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLAT 254
+LFED F V ++ E K+DRVSRL C S + LDINS +YP GE + LA+
Sbjct: 5 LLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMALAS 61
>UniRef50_Q4P603 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 161
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLAT 254
LF+ F V +DP+GKKFDRVSR+ S S M L +DI + I+P+ G++ LA+
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIATSPSLDMTLSIDIATDIWPVTEGQQLTFQLAS 63
Score = 51.6 bits (118), Expect = 1e-05
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +1
Query: 286 RMEPSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLH 465
R++ GN AD F+YVM GK+YR DE A + Y SFGGL+M L G+ ++
Sbjct: 95 RLDQPGNG-GIADDFDYVMYGKIYRY--DEKV---ADEVTVYGSFGGLMMALTGNFRHMS 148
Query: 466 GFEVDQHMYLLMK 504
+ ++YLLM+
Sbjct: 149 NITIGSNVYLLMR 161
>UniRef50_A6QU50 Cluster: DNA-directed RNA polymerases i; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerases i - Ajellomyces capsulatus NAm1
Length = 129
Score = 50.0 bits (114), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +3
Query: 78 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLAT 254
VLFED F + ++ + K+DRV+R++C S LD+N+ +YP+ +GE L LA+
Sbjct: 5 VLFEDTFTITAINAQ--KYDRVARINCTSSDNLTTFTLDVNTELYPVAMGESLSLALAS 61
>UniRef50_Q40944 Cluster: Putative RNA polymerase II subunit; n=1;
Bigelowiella natans|Rep: Putative RNA polymerase II
subunit - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 147
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 90 DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLAT 254
DI + DP+GK +++VSR+ +S M+L DINS ++P+ +G+ L + T
Sbjct: 12 DIIKILSKDPDGKLYEKVSRIIAQSYYLNMELWFDINSHLFPIYVGDSLNLSIYT 66
Score = 35.5 bits (78), Expect = 0.97
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +1
Query: 322 DSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYL 495
D +EY M GKV+ I E + L Y SFGGLL++L+ L F + H+ L
Sbjct: 86 DKYEYFMIGKVFNII-TSIERETSFNLI-YASFGGLLLKLKVKKKYLKSFLPNSHLCL 141
>UniRef50_Q2H0W3 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 116
Score = 46.8 bits (106), Expect = 4e-04
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 60 NLIMAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFR 239
N+ LFE+ F ++ + K+DRV R++C+SE + + LDIN+ ++P + E+
Sbjct: 3 NIASDAQLFEEHFRIERLGDN--KYDRVDRIYCKSEDKSITMTLDINNELFPCKPDEELH 60
Query: 240 LVLAT 254
+ LAT
Sbjct: 61 VALAT 65
>UniRef50_Q7RN09 Cluster: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide; n=6; Plasmodium|Rep:
DNA-directed RNA polymerases i, ii, and iii 17.1 kDa
polypeptide - Plasmodium yoelii yoelii
Length = 160
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 322 DSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLM 501
++ EY+MSG++++ E E + E R Y S+GGL+M L D + E+D +YLL
Sbjct: 98 NNIEYIMSGRIFKFE--ELSSE---RRTVYASYGGLMMALTADKQFIGDLEIDMKIYLLA 152
Query: 502 K 504
K
Sbjct: 153 K 153
Score = 39.9 bits (89), Expect = 0.045
Identities = 17/50 (34%), Positives = 34/50 (68%)
Frame = +3
Query: 72 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQ 221
+ +LFED F + ++D KF++VSR+ +S + +LILD++S ++ ++
Sbjct: 3 SNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVE 50
>UniRef50_A7AQQ3 Cluster: RNA polymerase subunit 8c, putative; n=3;
Piroplasmida|Rep: RNA polymerase subunit 8c, putative -
Babesia bovis
Length = 145
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +3
Query: 72 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
A +FED F V+ +D KF+RVSR+ +S F +L+LDINS I+P+ + +++
Sbjct: 4 ATCVFEDRFVVRSID--NSKFERVSRITAKSTGFDAELLLDINSDIFPVTVKSMLHILM 60
Score = 40.3 bits (90), Expect = 0.034
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +1
Query: 328 FEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKK 507
+EY M GK+++ E + + E + Y SFGGLLM L D + ++D +YL+ ++
Sbjct: 86 YEYAMYGKIFKFE--DVSSETRT---IYASFGGLLMSLTADKQVIADLDLDMRIYLMARR 140
>UniRef50_Q4Q8I8 Cluster: RNA polymerase B subunit RPB8, putative;
n=6; Trypanosomatidae|Rep: RNA polymerase B subunit
RPB8, putative - Leishmania major
Length = 149
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +3
Query: 78 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 251
V+ ED F V ++ EG + RVSR+ C ++ + + DINS +P+ ++ +VLA
Sbjct: 6 VILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVSTNDRLTIVLA 63
Score = 37.1 bits (82), Expect = 0.32
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 304 NRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
+R R + +Y M G+VY E E +E + ++S GGLL+ + G L +
Sbjct: 83 HRETRLNDCDYAMHGRVYGHEVVENGLE----VNVHISCGGLLVNIVGKPQGLRDVHYNS 138
Query: 484 HMYLLMKK 507
+Y+L+K+
Sbjct: 139 DVYILIKR 146
>UniRef50_UPI00004983D0 Cluster: RNA polymerase subunit Rpb8; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb8 - Entamoeba histolytica HM-1:IMSS
Length = 143
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 307 RRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQH 486
+ + D F+YVMSG V++ ++ L+ SFGGLL+ L G L + +
Sbjct: 79 KNTKMDDFDYVMSGMVFKFVENKND----DNLSVIASFGGLLLMLYGKPEKLSAYNMKDQ 134
Query: 487 MYLLMKK 507
+YLL++K
Sbjct: 135 VYLLIRK 141
>UniRef50_UPI00006CB425 Cluster: RNA polymerase Rpb8 family protein;
n=1; Tetrahymena thermophila SB210|Rep: RNA polymerase
Rpb8 family protein - Tetrahymena thermophila SB210
Length = 130
Score = 39.5 bits (88), Expect = 0.060
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 325 SFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNL-HGFEVDQHMYLLM 501
SF Y M GK+++I+ +E + Y+S+GGL+M+++G N++ + + Y+L+
Sbjct: 73 SFSYAMYGKIFKID-----LEQDQYQSIYISYGGLVMKMRGKLNDMSQSIKNETRCYILL 127
Query: 502 KK 507
++
Sbjct: 128 RQ 129
>UniRef50_Q8SRJ5 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 120
Score = 34.7 bits (76), Expect = 1.7
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLG 227
+ D F V D+D EGK + VSR + +S + +D+ LD N+ + +Q G
Sbjct: 3 ILADNFKVSDIDREGKLYANVSRAYMKSPT--VDIALDYNTVLCRLQTG 49
>UniRef50_Q4HFD8 Cluster: Helicase conserved C-terminal domain
protein; n=1; Campylobacter coli RM2228|Rep: Helicase
conserved C-terminal domain protein - Campylobacter coli
RM2228
Length = 704
Score = 33.9 bits (74), Expect = 3.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 390 RLHRCLVTFYPVYFSGHDIFETICSISSVSRGFHSP 283
RLHRCL F G D+ +TI S SS+ G + P
Sbjct: 354 RLHRCLSQLQVRLFEGKDLLKTIVSTSSLIEGVNIP 389
>UniRef50_Q6BK91 Cluster: Similar to sp|Q06554 Saccharomyces
cerevisiae YLR247c; n=3; Saccharomycetaceae|Rep: Similar
to sp|Q06554 Saccharomyces cerevisiae YLR247c -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 1781
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 280 VRVSVFPQRVAKTRRNFSPSCIGYIQELMSNIKSI 176
+ ++F + + +TRRN P C +QEL+ NIK I
Sbjct: 1272 INSTIFLKELEETRRNVKPICKSSLQELVFNIKDI 1306
>UniRef50_A6GR44 Cluster: Probable epoxide hydrolase; n=1;
Limnobacter sp. MED105|Rep: Probable epoxide hydrolase -
Limnobacter sp. MED105
Length = 286
Score = 33.1 bits (72), Expect = 5.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 351 FSGHDIF--ETICSISSVSRGFHS-PPSGYPFSLNAWPKLDETFRLVALDI 208
+ GH IF +T S V H P + Y F L WP L ET RL+A D+
Sbjct: 15 WEGHSIFVQDTAASNKPVLLLIHGFPTASYDFHL-LWPDLAETHRLIAFDM 64
>UniRef50_Q7QYG2 Cluster: GLP_162_7496_7044; n=2; Giardia
intestinalis|Rep: GLP_162_7496_7044 - Giardia lamblia
ATCC 50803
Length = 150
Score = 33.1 bits (72), Expect = 5.2
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 331 EYVMSGKVY--RIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLL 498
+Y M G V+ R GD+ M ++SFGGL+ +LQ A L F+ +YLL
Sbjct: 96 DYAMHGTVFEFRAVGDKVDM--------FISFGGLIAKLQAPAFRLERFKFGMKLYLL 145
>UniRef50_Q0BPE1 Cluster: Putative uncharacterized protein; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Putative
uncharacterized protein - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 205
Score = 32.7 bits (71), Expect = 6.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 439 AASGGHRTRRRPLIWMPAPSLPRHL 365
+ASG +R RRP+IWM A S+ HL
Sbjct: 10 SASGYYRQSRRPVIWMSAASIACHL 34
>UniRef50_Q4RNC5 Cluster: Chromosome 2 SCAF15014, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF15014, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 605
Score = 32.3 bits (70), Expect = 9.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 50 HRIKLDHGGRAIRGHFQRQRHGSGGQKVRQSQP 148
HR+ + GRA G R+ +G+GG +V QP
Sbjct: 215 HRLHVQAAGRAAGGRTHRRSNGAGGPQVHSGQP 247
>UniRef50_A0US72 Cluster: Putative uncharacterized protein
precursor; n=1; Burkholderia multivorans ATCC 17616|Rep:
Putative uncharacterized protein precursor -
Burkholderia multivorans ATCC 17616
Length = 1159
Score = 32.3 bits (70), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 59 KLDHGGRAIRGHFQRQRHGSGGQ-KVRQSQPIALRIGVIQNGFNIGH*FLDISNATRRKV 235
+L HG R RG + RHG GQ ++ + + LR + G N+ H + + A +
Sbjct: 547 RLAHGRRNARGRLRTARHGRAGQTRIAERKAHVLRRKAERVGRNLRHHRVG-AGADVLRA 605
Query: 236 SSSFGHALREN 268
FG A+R++
Sbjct: 606 RRDFGRAVRQD 616
>UniRef50_A0KZ50 Cluster: Beta-hydroxyacyl-(Acyl-carrier-protein)
dehydratase, FabA/FabZ; n=15; Gammaproteobacteria|Rep:
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase,
FabA/FabZ - Shewanella sp. (strain ANA-3)
Length = 1989
Score = 32.3 bits (70), Expect = 9.1
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -1
Query: 321 CSISSVSRGFHSPPSGYPFSLNAWPKLDETFRLVALDISK 202
C R FH P GY A+ LDE+F L ALD SK
Sbjct: 83 CDKGGYIRNFHFDPQGYQLPPTAFEGLDESF-LWALDCSK 121
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,284,948
Number of Sequences: 1657284
Number of extensions: 12912032
Number of successful extensions: 38437
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 37077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38411
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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