Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30230
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    53   4e-08
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   2.1  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   4.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.5  

>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +1

Query: 304 NRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
           N  +  ++ +Y+M GKVYR+E  EA  E   +++ YVSFGGLLM ++G    L+   +D 
Sbjct: 64  NSPDLKEAADYIMYGKVYRVE--EAKDE---KVSVYVSFGGLLMAIEGSHRKLYRLSLD- 117

Query: 484 HMYLLMKK 507
           H+YLL+++
Sbjct: 118 HVYLLLRR 125



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%)
 Frame = +3

Query: 78  VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATR 257
           VL ++IF V  +D +  K+ RVSR+   S    M+L LDINS IYP++    F L + + 
Sbjct: 5   VLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSN 62

Query: 258 *GKTD 272
               D
Sbjct: 63  LNSPD 67


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -3

Query: 406 PLIW--MPAPSLPRHLLSCILFRT*HIRNYLLDFFGFQRVPFSAVRVSVFPQRVAKTRRN 233
           PL W  +  P LPR L+SC      +I   L  FF    VP   +     P  V    +N
Sbjct: 508 PLTWQGLYIPVLPRRLISCFEAPCSYIIGTLSYFFHMDDVPLDNI-----PLVVCDLDKN 562

Query: 232 FSPSCIGYIQELMSNIKSIL 173
            S S  G I  L  +++S L
Sbjct: 563 -SVSTFGKIVRLSRSLRSKL 581


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 VKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLG 227
           ++ +D  GK     SRL  E ++  +D+   +NS +Y + LG
Sbjct: 720 LETLDDYGKLLAHFSRLAPEFQTGMLDMFRTLNSRVYQLILG 761


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 166 SDSQCNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVN 47
           S+ Q  + +L ++ PSGS+  T+K  S+   + + F+  N
Sbjct: 248 SEPQDGQQSLLSWKPSGSVLATIKSDSSDNSSKVIFFERN 287


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 126 KKFDRVSRLHCESESFKMDLILDIN 200
           KK  R++RL  ESE F+   + DIN
Sbjct: 71  KKTVRLNRLQRESEQFENSALKDIN 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,835
Number of Sequences: 5004
Number of extensions: 52943
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)