Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30230
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 73 1e-13
03_06_0660 - 35349264-35349375,35349914-35350017,35350211-353503... 71 5e-13
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 28 6.5
11_08_0024 + 27747449-27747940,27748141-27750177 27 8.7
11_06_0754 - 26935647-26937780,26940890-26941827 27 8.7
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 8.7
07_03_0314 + 16669072-16669553,16669936-16671106,16671394-166720... 27 8.7
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 27 8.7
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 27 8.7
>06_03_1257 -
28790660-28790785,28791126-28791283,28791528-28791604,
28791825-28791955
Length = 163
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +3
Query: 81 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 251
LFEDIF V +DP+GKKFDRVSR+ SE F M + LD+ + +YPM+ G++F +VLA
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLA 106
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 307 RRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 420
R+ AD F+YVM GK+Y+I D ++ + A+++ + F
Sbjct: 125 RKTLADKFDYVMHGKLYKISEDSSSGQ-ATKVYGFYEF 161
>03_06_0660 -
35349264-35349375,35349914-35350017,35350211-35350368,
35350899-35350986,35352927-35353025,35353377-35353472,
35353591-35353628,35357960-35358285,35358600-35358796
Length = 405
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +3
Query: 69 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
MA LFEDIF V +DP+GKKFDRVSR+ S+ F M + LD+ + +YPM G++F +VL
Sbjct: 258 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 317
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +1
Query: 307 RRNRADSFEYVMSGKVYRIEGD-EAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQ 483
R+ AD +EYVM GK+Y+I D + + + A ++ Y SFGGLL+ L+GD ++ FE+DQ
Sbjct: 337 RKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQ 396
Query: 484 HMYLLMKK 507
++LLM+K
Sbjct: 397 RLFLLMRK 404
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 215 NATRRKVSSSFGHALRENGYPDGGEWN-PLETE-EIEQIVSNM 337
N K S+ H ENG PD E + P++T+ ++E ++ N+
Sbjct: 531 NMQESKCSADATHGAAENGKPDSEEISAPMDTDAKVEPLIKNV 573
>11_08_0024 + 27747449-27747940,27748141-27750177
Length = 842
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -3
Query: 280 VRVSVFPQRVAKTRRNFSPSCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPSGSMSLT 101
V + V Q + R+F C N+ ILN +Q R + ++P+GS+
Sbjct: 756 VAIKVIHQHMEHAIRSFDTECRVLRTARHRNLIKILNTCSNQDFRALVLEYMPNGSLEAL 815
Query: 100 L 98
L
Sbjct: 816 L 816
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -3
Query: 220 CIGYIQELMSNIKSI-LNDSDSQC-NRLTLSNFLPSGSMSLTLKMSSNSTPAMIK 62
C+G+I + +SN+KS+ ++ + S C N S+ S +S S +S PA+++
Sbjct: 755 CLGFILQKLSNLKSVTMSTAGSSCVNSTDASSANVSVRISGDGLSSMSSPPALVE 809
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 375 GSDGAGIQISGLRLVRWPPDAAARGREQLARLRS 476
G G ++ LR VRWPP R L ++ S
Sbjct: 217 GGVGCRAFVASLRNVRWPPRGGVRHNRMLEKIAS 250
>07_03_0314 +
16669072-16669553,16669936-16671106,16671394-16672042,
16672165-16672187
Length = 774
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 175 LNDSDSQ-CNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVNLFY*NNINN 20
LN SD+Q C L + P +++ + + SN+ + +PVN+ Y + NN
Sbjct: 463 LNLSDNQLCGTLPRT---PEDMLAMVMDLGSNNLTGQVPRFPVNITYFDLSNN 512
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 442 AAASGGHRTRRRPLIWMPAP 383
AAA+ R RRRPL+ +P P
Sbjct: 46 AAAAAARRRRRRPLLQLPEP 65
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 372 RGSDGAGIQISGLRLVRWPPDAAAR 446
RG+D I +G+ +VRW P AAR
Sbjct: 207 RGADRTAINCNGIVVVRWLPIDAAR 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,000
Number of Sequences: 37544
Number of extensions: 381957
Number of successful extensions: 1285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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