Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30230
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5906| Best HMM Match : RNA_pol_Rpb8 (HMM E-Value=0)                113   1e-25
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  31   0.54 
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               31   0.54 
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_30146| Best HMM Match : Ank (HMM E-Value=1.1)                       29   2.9  
SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   5.1  
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)                28   6.7  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_10407| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_5906| Best HMM Match : RNA_pol_Rpb8 (HMM E-Value=0)
          Length = 124

 Score =  113 bits (271), Expect = 1e-25
 Identities = 55/74 (74%), Positives = 59/74 (79%)
 Frame = +1

Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
           P     +RAD FEYVM GKVYRIEGDE   +PASRLAAYVS+GGLLMRLQGDANNLHG E
Sbjct: 52  PVDTTPSRADQFEYVMYGKVYRIEGDEGP-DPASRLAAYVSYGGLLMRLQGDANNLHGIE 110

Query: 475 VDQHMYLLMKK*RF 516
            D H+YLLMKK  F
Sbjct: 111 ADDHVYLLMKKLAF 124



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/37 (86%), Positives = 36/37 (97%)
 Frame = +3

Query: 144 SRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLAT 254
           SRLHCESESFKMDLILDINS +YP++LG+KFRLVLAT
Sbjct: 2   SRLHCESESFKMDLILDINSQVYPVELGDKFRLVLAT 38


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -3

Query: 211 YIQELMSNIKSILNDSDSQCN-RLTLSNFLPSGSMSLTLKMSS 86
           Y+Q L+S + S + D++   N  LTLSN LP+ S+ +TL +SS
Sbjct: 143 YLQPLVSKLPSYVKDTNHFLNILLTLSN-LPTDSLLVTLDVSS 184


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -3

Query: 211 YIQELMSNIKSILNDSDSQCN-RLTLSNFLPSGSMSLTLKMSS 86
           Y+Q L+S + S + D++   N  LTLSN LP+ S+ +TL +SS
Sbjct: 100 YLQPLVSKLPSYVKDTNHFLNILLTLSN-LPTDSLLVTLDVSS 141


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 388  PASRLAAYVSFGGLLMRLQGDANNLHGFEVD--QHMYLLMKK*RFSSIILFVK 540
            P +R+A Y+ FG  ++  +   + +HG+E+D       L+   R SSI+++VK
Sbjct: 1463 PHTRMATYM-FGAPVVHTENKVHPMHGYELDNPDRFGFLVLSDRSSSILVWVK 1514


>SB_30146| Best HMM Match : Ank (HMM E-Value=1.1)
          Length = 383

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 286 RMEPSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLH 465
           R++      N    F+YV++G+V  ++G           +A  +F  LL+R   +ANN  
Sbjct: 72  RVKLEDRTSNERALFDYVLTGRVKDLKGLLTDNPKLDLSSADRNFTRLLLRTAIEANNAD 131

Query: 466 GFEV 477
            FEV
Sbjct: 132 VFEV 135


>SB_46136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 251 HALRENGYPDGGEWNPLETEEIEQIVSNM 337
           H LRE+  P+GGE   +ET++  Q VS++
Sbjct: 62  HELRESSKPEGGE--AMETDQANQSVSDL 88


>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 434

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 272 YPDGGEWNPLETEEIEQIVSNMSCPEKY 355
           Y   GEW  +  + +  +V    CPE Y
Sbjct: 206 YSQNGEWELVSADAVRNVVKYSCCPEPY 233


>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 53  RIKLDHGGRAIRGHFQRQRHGSGGQKVRQ 139
           RI  DHG R +  H +R+ HG  G +  Q
Sbjct: 59  RILYDHGTRTLYDHDKRKLHGHHGTRTMQ 87


>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 26  DIVLVK*IHRIK---LDHGGRAIRGHFQRQRHGSGGQKVRQSQPIALRIGVIQNGFNIGH 196
           D+++V  ++ +K   L        G F  Q H SGG+ V   +P+  +  V++   +  H
Sbjct: 140 DVIMVDALNNVKSISLGLNTHGKMGFFAAQHHMSGGRHVMSVRPMTTQASVVEKKMHQAH 199


>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
          Length = 375

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 447 PLQPHQEATERDVGR*SGCRLHRCLVTFYPVYFSGHDIFETICSISSVSRGFHSPPSGY 271
           P+ P Q    R + +    RL   +V++ P  F G++       I+ +S G H  P+GY
Sbjct: 136 PVTPAQIGISRQIRKFLTGRLDAPIVSYPP--FPGNETNYLRAQIARISAGSHISPAGY 192


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 120 EGKKFDRVSRLHCESESFKMDLILDINSWIYPMQ 221
           E  K + ++    E +SFK D+I D++ +I P++
Sbjct: 339 EALKSEILAEFRMELDSFKQDIIADVDGFIPPLR 372


>SB_10407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 569 KYTNLFLRVNFTNN-IIELKRYFFINKYMC 483
           K+T  + R ++TN  ++EL++ F  NKY+C
Sbjct: 97  KHTKRY-RTSYTNRQLLELEKEFHYNKYLC 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,789
Number of Sequences: 59808
Number of extensions: 392328
Number of successful extensions: 942
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)