Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30230
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit...   118   2e-26
U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit...   118   2e-26
BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DN...   118   2e-26
AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.                118   2e-26
X95190-1|CAA64489.1|  681|Homo sapiens branched chain acyl-CoA o...    30   7.2  
BC047700-1|AAH47700.1|  681|Homo sapiens acyl-Coenzyme A oxidase...    30   7.2  
AJ001541-1|CAB65596.1|  681|Homo sapiens peroxisomal branched ch...    30   7.2  

>Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit
           hRPB17 protein.
          Length = 150

 Score =  118 bits (284), Expect = 2e-26
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +1

Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
           P+ +R +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GGLLMRLQGDANNLHGFE
Sbjct: 77  PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFE 136

Query: 475 VDQHMYLLMKK*RF 516
           VD  +YLLMKK  F
Sbjct: 137 VDSRVYLLMKKLAF 150



 Score =  115 bits (276), Expect = 1e-25
 Identities = 51/62 (82%), Positives = 59/62 (95%)
 Frame = +3

Query: 69  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 249 AT 254
           A+
Sbjct: 61  AS 62


>U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 150

 Score =  118 bits (284), Expect = 2e-26
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +1

Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
           P+ +R +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GGLLMRLQGDANNLHGFE
Sbjct: 77  PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFE 136

Query: 475 VDQHMYLLMKK*RF 516
           VD  +YLLMKK  F
Sbjct: 137 VDSRVYLLMKKLAF 150



 Score =  112 bits (270), Expect = 8e-25
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = +3

Query: 69  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
           MAG+LFEDIF+VKD+DPE KKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEAKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 249 AT 254
           A+
Sbjct: 61  AS 62


>BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide H protein.
          Length = 150

 Score =  118 bits (284), Expect = 2e-26
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +1

Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
           P+ +R +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GGLLMRLQGDANNLHGFE
Sbjct: 77  PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFE 136

Query: 475 VDQHMYLLMKK*RF 516
           VD  +YLLMKK  F
Sbjct: 137 VDSRVYLLMKKLAF 150



 Score =  115 bits (276), Expect = 1e-25
 Identities = 51/62 (82%), Positives = 59/62 (95%)
 Frame = +3

Query: 69  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 249 AT 254
           A+
Sbjct: 61  AS 62


>AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.
          Length = 150

 Score =  118 bits (284), Expect = 2e-26
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +1

Query: 295 PSGNRRNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFE 474
           P+ +R +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GGLLMRLQGDANNLHGFE
Sbjct: 77  PTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFE 136

Query: 475 VDQHMYLLMKK*RF 516
           VD  +YLLMKK  F
Sbjct: 137 VDSRVYLLMKKLAF 150



 Score =  115 bits (276), Expect = 1e-25
 Identities = 51/62 (82%), Positives = 59/62 (95%)
 Frame = +3

Query: 69  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 249 AT 254
           A+
Sbjct: 61  AS 62


>X95190-1|CAA64489.1|  681|Homo sapiens branched chain acyl-CoA
           oxidase protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  QRQRHGSGGQKVRQSQPIALRIGVIQNGFNIGH*FLDISNATRRKVSSSFGHALRENGYP 277
           Q +R+ +  ++    + IA R+G +++G  +G+ +  +S      +   F  ALR  G  
Sbjct: 73  QNERYKAAMRRAFHIRLIARRLGWLEDGRELGYAYRALSGDVALNIHRVFVRALRSLGSE 132

Query: 278 DG-GEWNPL 301
           +   +W+PL
Sbjct: 133 EQIAKWDPL 141


>BC047700-1|AAH47700.1|  681|Homo sapiens acyl-Coenzyme A oxidase 2,
           branched chain protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  QRQRHGSGGQKVRQSQPIALRIGVIQNGFNIGH*FLDISNATRRKVSSSFGHALRENGYP 277
           Q +R+ +  ++    + IA R+G +++G  +G+ +  +S      +   F  ALR  G  
Sbjct: 73  QNERYKAAMRRAFHIRLIARRLGWLEDGRELGYAYRALSGDVALNIHRVFVRALRSLGSE 132

Query: 278 DG-GEWNPL 301
           +   +W+PL
Sbjct: 133 EQIAKWDPL 141


>AJ001541-1|CAB65596.1|  681|Homo sapiens peroxisomal branched chain
           acyl-CoA oxidase protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  QRQRHGSGGQKVRQSQPIALRIGVIQNGFNIGH*FLDISNATRRKVSSSFGHALRENGYP 277
           Q +R+ +  ++    + IA R+G +++G  +G+ +  +S      +   F  ALR  G  
Sbjct: 73  QNERYKAAMRRAFHIRLIARRLGWLEDGRELGYAYRALSGDVALNIHRVFVRALRSLGSE 132

Query: 278 DG-GEWNPL 301
           +   +W+PL
Sbjct: 133 EQIAKWDPL 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,964,330
Number of Sequences: 237096
Number of extensions: 1891188
Number of successful extensions: 4557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4553
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)