Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30230
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-16|AAA91226.1|  148|Caenorhabditis elegans Hypothetical p...    96   2e-20
Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    28   5.9  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    28   5.9  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U12964-16|AAA91226.1|  148|Caenorhabditis elegans Hypothetical
           protein F26F4.11 protein.
          Length = 148

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 41/62 (66%), Positives = 54/62 (87%)
 Frame = +3

Query: 69  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 248
           MAG++F+D+F VK +DP+GKKFDRVSR  C++ESFKM+LI+DINS IYP++  +K RLVL
Sbjct: 1   MAGIIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVL 60

Query: 249 AT 254
           AT
Sbjct: 61  AT 62



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 41/64 (64%), Positives = 50/64 (78%)
 Frame = +1

Query: 316 RADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYL 495
           R   +EYVM GKVYR+E D+   +   +LAAY SFGGLLMRL+G+A NLHGFEVD ++YL
Sbjct: 83  RIKQYEYVMYGKVYRLEDDDTGTD-GGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYL 141

Query: 496 LMKK 507
           LMKK
Sbjct: 142 LMKK 145


>Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical
           protein F34H10.4 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 292 PFSAVRVSVFPQRVAKTRRNFSPSCIGYIQELMSNIKSILNDSDSQCNR 146
           P +  +VS F ++++    N  P       E++SN++++ ++SD + NR
Sbjct: 54  PNTLHQVSNFLEKLSVQAYNVQPLLSSAKYEILSNVRNLKSESDGKINR 102


>Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical
           protein F46G10.2 protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = -3

Query: 301 QRVPFSAVRVSVFPQRVAKTRRNFS-----PSCIGYIQELMSNIKSILNDSDSQ--CNR 146
           Q++ FSA++ S +P R  K ++ F      P   G  ++ M  I   L  S+++  C+R
Sbjct: 371 QKIAFSALKSSQYPNRKTKPKKAFKVMLVCPEVSGRDEDFMMRIADALKKSNNKVVCDR 429


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 52  QDKT*SWRACYSRTFSTSKTWIRRAKSSTES 144
           QD+   W  CY +T    K  IR A S  E+
Sbjct: 322 QDEIAKWSNCYQKTLEKEKCAIRNATSKCEA 352


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 337 HIRNYLLDFFGFQRVPFSAVRVSVFPQRVAKTRRNFSPSCIGYIQELMSNIKSILNDSDS 158
           H++ YL+D F     PF  V +S+      K R +    C+    E +SN + +LN  +S
Sbjct: 87  HVQFYLMDVFHHTGFPFDNVVISL---AFIKFRADRLNGCM----EFVSNAREVLNSIES 139

Query: 157 QCNR 146
           + ++
Sbjct: 140 EIDQ 143


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 337 HIRNYLLDFFGFQRVPFSAVRVSVFPQRVAKTRRNFSPSCIGYIQELMSNIKSILNDSDS 158
           H++ YL+D F     PF  V +S+      K R +    C+    E +SN + +LN  +S
Sbjct: 121 HVQFYLMDVFHHTGFPFDNVVISL---AFIKFRADRLNGCM----EFVSNAREVLNSIES 173

Query: 157 QCNR 146
           + ++
Sbjct: 174 EIDQ 177


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -3

Query: 253  VAKTRRNFSPSCIGYIQELMSNIKSILN-DSDSQCNRLTLSNFLPSGSMSLTLKMSSNST 77
            +A  R+N   +     + L  N   +    S S      LSN    G  ++++ +SSN T
Sbjct: 1189 LANVRQNVYENTTSGYRALNENFLVLFTLGSSSSSVSQELSNLQRKGIRTISIGLSSNMT 1248

Query: 76   PAMIKFYPVNLFY*NNINN 20
            P+ +  +  N F  ++ N+
Sbjct: 1249 PSALSSFAQNAFMVSDWNS 1267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,645
Number of Sequences: 27780
Number of extensions: 301808
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)