Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30230
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              26   0.33 
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 266 NGYPDGGEWNPLETEEIEQI 325
           NGY DGG +N +   EI +I
Sbjct: 71  NGYDDGGNFNEVVIREIAEI 90


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 266 NGYPDGGEWNPLETEEIEQI 325
           N Y DGG +N +   EI +I
Sbjct: 71  NAYDDGGNFNEVVVREIAEI 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 85  SRTFSTSKTWIRRAKSSTESADC 153
           S +  TS  W+    + T SADC
Sbjct: 24  SESAGTSCKWLSEGGNDTRSADC 46


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 192 DINSWIYPM 218
           DIN W+YP+
Sbjct: 292 DINQWVYPL 300



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 385 PSLPRHLLSCILF 347
           P  P + LSCILF
Sbjct: 201 PEFPLYQLSCILF 213


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 269 GYPDGGEWNPLETEEIEQIVSNMSCPEKY 355
           G+P    WNP      + +  N+  P+KY
Sbjct: 109 GFPGEEMWNPNTNISEDCLYLNIWVPQKY 137


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 269 GYPDGGEWNPLETEEIEQIVSNMSCPEKY 355
           G+P    WNP      + +  N+  P+KY
Sbjct: 109 GFPGEEMWNPNTNISEDCLYLNIWVPQKY 137


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 443 CSRIRRPPNET*AANLDAGSIAASSPS 363
           CS  +RP ++  +   + GSI A S S
Sbjct: 881 CSDRKRPASQATSVKAEPGSIMAMSES 907


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 90  DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDI 197
           DI + KD+DP       +  L  E++   + +ILD+
Sbjct: 83  DISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVILDL 118


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 334 IRNYLLDFFGFQRVPFSAVRVSVFPQRVAK 245
           I++YL+ FF  +   F    + + P+R  K
Sbjct: 302 IKSYLIQFFANKNQKFYERGIMMLPERWQK 331


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 325 YLLDFFGFQRVPFSAVRVSVFPQRVAKTRRNF 230
           YLL F G Q +  + +++  F  ++ +    F
Sbjct: 247 YLLVFIGLQSLSLTNIQLEHFEMKIKRKHNVF 278


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 90  DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILD 194
           DI N  D+DP         RL   ++S  + +ILD
Sbjct: 85  DISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILD 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,449
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)