Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30229
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    29   0.48 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.6  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.8  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   7.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.8  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 285 ALVHWQGLRPGVMGSVGGLWSGARQQTSM 199
           A+ +W G++P V G +GGL +G   QT +
Sbjct: 10  AIDYWNGVQPTVDGMLGGLGTGRIPQTDV 38


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 15  TGLHRPWCL 41
           TGLHRPWCL
Sbjct: 684 TGLHRPWCL 692


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 99  HSPSWPSEVWHERSSFVETPGTRVDGALSAT 7
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 78  PTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTST 206
           P     + +T TC+ RP   +S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 160 DVGSVSDNGVIGRIAQVIVDALPFLAV 80
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +2

Query: 506 RTEDQSRRMGHAEHE----GDISVSRQDSQGNRDTQG 604
           R E   R  GHA       G+I+ SR+D Q NR   G
Sbjct: 250 REESFKRAFGHASSSESSIGEITDSREDIQSNRLVNG 286


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 130  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPV 14
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 356 PNLVSPSTSPVVRKATPSGFR 294
           PN +SPST P++  +  S FR
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFR 273


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 130  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPV 14
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -1

Query: 661 YWSLEEQQSYVVEQFPLLKSLCITITLTVLS*YGYISFVFCVSHSPALI 515
           Y   E   S ++++FPL K+LC+ + +     +G++  +  V++ P  I
Sbjct: 113 YLVFEFPASLLLQRFPLSKTLCVFLVI-----WGFLLCMTSVANYPGFI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,466
Number of Sequences: 5004
Number of extensions: 53914
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)