Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30229
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0650 + 26950912-26951397,26951552-26951728 28 0.42
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.49
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709... 29 2.6
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.5
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 4.6
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 6.1
06_02_0214 + 13141213-13143741 28 6.1
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 28 6.1
01_01_0540 + 3957622-3960903 28 6.1
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 28.3 bits (60), Expect(2) = 0.42
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 467 TWCSRPLTTLPPLRTEDQSRRMGHAEHEGDI 559
TW +R PP+R +DQ +++ E E +
Sbjct: 24 TWTARRSVRFPPVRAQDQQQQVKEEEEEAAV 54
Score = 22.6 bits (46), Expect(2) = 0.42
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 323 PRATWTAR 346
PRATWTAR
Sbjct: 21 PRATWTAR 28
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 160 DVGSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 59
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>06_01_0919 -
7090494-7091219,7091630-7091763,7091860-7091927,
7092471-7092515,7092620-7092639,7092798-7092860,
7092946-7093115,7093216-7093252
Length = 420
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 479 RPLTTLPPLRTEDQSRRMGHAEHEGDISVSRQDSQGNRDTQG 604
+PL+TLPPL + +R G +GD + S D +QG
Sbjct: 245 QPLSTLPPLPDLEIPQRKGPLCIDGDANESDNDDTATTSSQG 286
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 334 VDGETKFGEFPWMVAILKVEPVDDNEP 414
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 631 VVEQFPLLKSLCITITLTVLS-*YGYISFVFCVSHSPAL 518
V F LLK LCIT++ LS Y Y+S V + P+L
Sbjct: 333 VPNTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = -2
Query: 444 PYVNVQLLSFGLV----VIDWFNLEDGDHPGELSELGLAVHVARGPEGNAVRVPPAAALV 277
P + +QL +G V V WF +L G G GN PPAAA
Sbjct: 164 PRIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRSGGTG-RAGLGLGGNRASEPPAAATA 222
Query: 276 HWQGLRP 256
H + + P
Sbjct: 223 HREAVAP 229
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 388 VEPVDDNEPEGQKLNVYVGGGS--LIHPNVVLTAAHYVAAA 504
V P E G K+N GGGS LI P++V + A +AA+
Sbjct: 246 VNPSVTREVNGGKVNYMKGGGSTPLIAPDIVYSTATELAAS 286
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = -2
Query: 381 DGDHPGELSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRPGVMGSVGGLWSGARQQ 208
DG G+ LG H G + A + W G + ++ GGLW R++
Sbjct: 70 DGSGDGDSGRLGDGDHAGLGDDDRGGGASAMARRIQWWGGQRRLIRRWGGLWRWIRRR 127
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 373 VAILKVEPVDDNE-PEGQKLNVYVGGGSLIHPNVVLTAAHYVAA-AKD*RSE 522
+ +L P++ P +K+ VY G L+ VVL AAHYV+ A+ RSE
Sbjct: 867 IRLLTRSPLEPGRVPSDKKVLVYTSGAHLVGFAVVL-AAHYVSVLARPVRSE 917
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,267,661
Number of Sequences: 37544
Number of extensions: 443465
Number of successful extensions: 1415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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