Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30229
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    30   1.4  
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    30   1.4  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    29   3.1  
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    28   7.2  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    28   7.2  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   7.2  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 445 GGSLIHPNVVLTAAHYVA 498
           GGSLI PN VLTAAH  A
Sbjct: 85  GGSLIDPNFVLTAAHCFA 102


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 315 GNAVRVPPAAALVHWQGLRPGVMG-SVGGLWSGARQQTSMY 196
           G + + PP A+L HW  L+ G  G S     +G + QT+++
Sbjct: 329 GQSQKAPPMASLWHWASLKVGSSGISANVKKNGEKSQTTLH 369


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 116 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 235
           C +  ++I + G    ++ +  GPCS++ID C   PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 315 GNAVRVPPAAALVHWQGLRPGVMGSVGGL 229
           G + + PP A+L HW  LR G  G  G +
Sbjct: 304 GQSQKAPPMASLWHWAHLRVGSEGIRGNV 332


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 177 AVARVHRTSTSAVWLPTRDRQQIPSRQAGDPANEPGLRLAEP 302
           A+ +V  TST  V + T  RQ   +  AGD  +E  + L  P
Sbjct: 645 ALPKVKETSTHTVTVATSFRQIFSTMSAGDEISEANVELTIP 686


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 177  AVARVHRTSTSAVWLPTRDRQQIPSRQAGDPANEPGLRLAEP 302
            A+ +V  TST  V + T  RQ   +  AGD  +E  + L  P
Sbjct: 5491 ALPKVKETSTHTVTVATSFRQIFSTMSAGDEISEANVELTIP 5532


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = +3

Query: 57   MTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTSTSAVWLPT--- 227
            +T +A  PTA   SAST   A  P T    T  T+ +  S          +   +PT   
Sbjct: 1524 VTPQAPQPTAAATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPAAHAAKTVIPTYKA 1583

Query: 228  ---RDRQQIPSRQAGDP 269
                 R+QIP+   G P
Sbjct: 1584 EPVLGREQIPTANDGQP 1600


>AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical
           protein T10H9.3 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 456 QRASPYVNVQLLSFGLVVIDWFN 388
           QRA    ++ +LSF L+ IDW+N
Sbjct: 392 QRAFLLFSIVVLSFALLFIDWYN 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,697,622
Number of Sequences: 27780
Number of extensions: 324078
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)