Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30229
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    32   0.41 
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    31   0.54 
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly...    30   1.7  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    29   2.2  
At3g09000.1 68416.m01053 proline-rich family protein                   29   2.2  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    29   3.8  
At1g68150.1 68414.m07785 WRKY family transcription factor simila...    29   3.8  
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin...    28   6.7  
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    28   6.7  
At2g24800.1 68415.m02967 peroxidase, putative similar to peroxid...    28   6.7  
At5g19340.1 68418.m02305 expressed protein                             27   8.9  

>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 256 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETK 351
           RP T+  N  C  G   PDG   +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140


>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 256 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 363
           RP T+  N  C  G   PDGV  +T GD DGE K   F
Sbjct: 103 RPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140


>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein similar to 70 kDa
           peptidylprolyl isomerase (Peptidylprolyl cis-trans
           isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
           aestivum]; FKBP-type peptidyl-prolyl cis-trans
           isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 229

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 45  SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI 167
           SLR    R+  P++   S+ST+  A R    LS+   TSS+
Sbjct: 26  SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/70 (35%), Positives = 37/70 (52%)
 Frame = +3

Query: 39  LASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTSTSAVW 218
           +A+LR    RA PP++    AST  C+ RP+  L    PT  I      +V R S +A +
Sbjct: 29  IANLRRFHRRAFPPSSV---ASTNLCSFRPLVSLPPLIPTFPIGRFYNHQV-RVS-AADF 83

Query: 219 LPTRDRQQIP 248
           +P+   QQ+P
Sbjct: 84  VPSYHNQQLP 93


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/91 (26%), Positives = 36/91 (39%)
 Frame = +3

Query: 9   SLTGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVAR 188
           S+ GL RP    S R+ +   RP T  + S +  T   RP+T  +    +S+    A   
Sbjct: 140 SVAGLRRPSSSGSSRSTS---RPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLT 196

Query: 189 VHRTSTSAVWLPTRDRQQIPSRQAGDPANEP 281
             R +TS     T       +R A    + P
Sbjct: 197 AARATTSTAAPRTTTTSSGSARSATPTRSNP 227


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 391 EPVDDNEPEGQKLNVYVGGGSLIHPNVVLTAAHYVAAAKD*RSEPA 528
           +P+D + P+G++ ++  G GS+    + L   H +   KD   EP+
Sbjct: 167 DPIDSSGPKGEQESL--GTGSMFRKEIYLGVMHKIKEFKDSLKEPS 210


>At1g68150.1 68414.m07785 WRKY family transcription factor similar
           to DNA-binding protein ABF2 GI:1159879 from [Avena
           fatua]
          Length = 374

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 205 RLLSGSRPETANR-SHHARPETLPMNQGCGWR 297
           R++S S+     R S  AR ET  MN GC WR
Sbjct: 210 RIISSSQGNRKARVSVRARCETATMNDGCQWR 241


>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 465

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 382 LKVEPVDDNEPEGQKLNVYVGGGSLIHPN 468
           L+ +  DD+ P   K+   +GGG++I PN
Sbjct: 242 LEDDEFDDHPPPPNKMKPMMGGGNMIMPN 270


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 382 LKVEPVDDNEPEGQKLNVYVGGGSLIHPN 468
           L+ +  DD+ P   K+   +GGG++I PN
Sbjct: 242 LEDDEFDDHPPPPNKMKPMMGGGNMIMPN 270


>At2g24800.1 68415.m02967 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781338|emb|CAA71496
          Length = 329

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 370 MVAILKVEPVDDNEPEGQKLNVYVGGGSLIHPNVVLTAAHYVAAA 504
           M A ++   +D +    + +N++   G  +H  VVL+ AH + AA
Sbjct: 155 MAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAA 199


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 5   SVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVN 106
           ++A+  PST  P +S + DLS   SDG +  C+N
Sbjct: 8   TMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,877
Number of Sequences: 28952
Number of extensions: 309605
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)