Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30228
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22B98 Cluster: Kinesin motor domain containing protein...    36   0.73 
UniRef50_UPI0000F2D0AE Cluster: PREDICTED: similar to hCG1785223...    32   6.8  

>UniRef50_Q22B98 Cluster: Kinesin motor domain containing protein;
            n=1; Tetrahymena thermophila SB210|Rep: Kinesin motor
            domain containing protein - Tetrahymena thermophila SB210
          Length = 1294

 Score = 35.5 bits (78), Expect = 0.73
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +3

Query: 252  KLICQSCSIYNKKQYKVMLLPSSKNDERLINDYVVYTLSILS*LITFHDEQQSHLCRATS 431
            ++I Q   IY K++YK M   S KN ++ I +    T + L     F D++Q+ L + + 
Sbjct: 809  QIINQGTPIYQKRKYKQMRRISQKNSQQNIKNKREQTQAYLLGSSQFEDDEQNDLNQKSK 868

Query: 432  HVSCSTLMIP 461
            H     + IP
Sbjct: 869  HFDNEPVHIP 878


>UniRef50_UPI0000F2D0AE Cluster: PREDICTED: similar to hCG1785223,,
            partial; n=1; Monodelphis domestica|Rep: PREDICTED:
            similar to hCG1785223,, partial - Monodelphis domestica
          Length = 1245

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 491  LLGVHGMFMSW-YHQRGTADVTSGSTQMTLLFIMKSNQSTQYRQCVNYI 348
            +LG   +FM+  Y Q+   D+T      T+L +M S  S +YR+C N +
Sbjct: 920  ILGQQEIFMNLQYMQQKMNDITVNKAITTVLQMMSSADSWKYRECTNIL 968


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,558,737
Number of Sequences: 1657284
Number of extensions: 8179896
Number of successful extensions: 15519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15519
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)