Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30228
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   6.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.8  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.0  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 217 IPTCTGIIYRGQYVRSNYILYTSLITRLKITYDR 116
           I TC   I +G+ +R+++ L    + RL  TY +
Sbjct: 318 IKTCEDAIEQGRELRADFKLIAKALGRLGTTYQK 351


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 61  YTITNKNLHFRNYAQRL 11
           Y + +KNL FRN+ +RL
Sbjct: 164 YPLNSKNLKFRNFRKRL 180


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 204 VHVGI*NNGYTH*TLIKLICQSCSIYNKKQYKVMLLPSSK 323
           V  G+  NG  H T   L+C + S+   K+++    P  +
Sbjct: 9   VKSGLVRNGAKHCTKRSLLCSNASVIASKRFQGSFAPGQQ 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,461
Number of Sequences: 5004
Number of extensions: 38495
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)