Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30228
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       30   0.97 
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    27   6.8  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 200 ASACGNIK*WIYPLNFD*TNMSIMLNLQQETVQSNASTEFQ 322
           A+ CG +  +++P+N+D  N+++     Q   Q+  S EF+
Sbjct: 373 AARCGLLGYFLWPVNYDDANLTVSRRASQVWTQTKISPEFK 413


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = -1

Query: 473 MFMSWYHQRGTADV---TSGSTQ----MTLLFIMKSNQSTQYRQCVNY 351
           ++MS YHQRGT DV    S   Q     ++LF+M  + ST Y   ++Y
Sbjct: 378 LYMSLYHQRGTEDVMFYLSREAQDGRVKSVLFLMPCH-STPYYSTLHY 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,872,347
Number of Sequences: 37544
Number of extensions: 206830
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)