Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30228
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 220 YIPTCTGIIYRGQYVRSNYILYTSLITRLKITYDREVETGSSMFSTXHFIILS 62
           Y+P CTG     Q  R +Y ++ S  T   ++Y   V T S + ST  F  L+
Sbjct: 541 YLPCCTGFSVWLQPERDSYGVFLSYGTDASVSYSAAVNT-SGLTSTLTFNYLA 592


>SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  LNMIK*XVENIELPVSTSRSYVIFSLVISDVYNI 164
           LN IK     IE P S SRS  +  L  +DVYNI
Sbjct: 48  LNKIKTIENAIEAPDSRSRSKKLTILHFNDVYNI 81


>SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  LNMIK*XVENIELPVSTSRSYVIFSLVISDVYNI 164
           LN IK     IE P S SRS  +  L  +DVYNI
Sbjct: 48  LNKIKTIGNAIEAPDSRSRSKKLTILHFNDVYNI 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,751
Number of Sequences: 59808
Number of extensions: 273749
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)