Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30228
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z75953-2|CAB00099.1|  257|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical
           protein T27F6.5a protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 381 LITFHDEQQSHLC-RATSHVSCSTLM 455
           +I FHD QQ+H+C + T+   C+ L+
Sbjct: 93  MIRFHDRQQNHMCLQPTAEEMCTELI 118


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 112 VETGSSMFSTXHFIILSYTITNKNLH 35
           V  G   F   H   L+Y +T+KNLH
Sbjct: 81  VNIGKDCFERFHISQLNYEVTSKNLH 106


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 112 VETGSSMFSTXHFIILSYTITNKNLH 35
           V  G   F   H   L+Y +T+KNLH
Sbjct: 81  VNIGKDCFERFHISQLNYEVTSKNLH 106


>Z75953-2|CAB00099.1|  257|Caenorhabditis elegans Hypothetical
           protein F57F5.3 protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 164 YIVYVTDYKTEDNV*P*SRDWQ--LNVFDXSFYHIELYDY 51
           Y  Y  DY T+ N     RD++  + VFD S Y+I +  Y
Sbjct: 38  YTDYYRDYLTKTNSNFAIRDYERKIRVFDSSIYYIRVLSY 77


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 426 WLYTNDFVVHHEK*SVNSVSTVCKLHNHLLVFHH 325
           WL+   ++    + +   VS VC+ H    V +H
Sbjct: 633 WLWIGRYIARRRRSTTKPVSVVCRSHAQTAVLYH 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,653
Number of Sequences: 27780
Number of extensions: 210292
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)