Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30222
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   112   4e-26
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    40   2e-04
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    39   7e-04
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   3.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.9  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  112 bits (269), Expect = 4e-26
 Identities = 46/83 (55%), Positives = 63/83 (75%)
 Frame = +1

Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 438
           DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   + +V
Sbjct: 156 DVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIV 215

Query: 439 EAIKTNFNERYEELRKHWGGGVL 507
            A+  NF+ +Y+E R+ WGGG++
Sbjct: 216 SAVDANFSAKYDESRRKWGGGIM 238



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   LKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXR 179
           LKVPP I QF +TLDK TA  +FK+L KYRPET                          +
Sbjct: 69  LKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKK 128

Query: 180 PNTIRSGTNTVTKLVEKKKAHL 245
           P  ++ G N V  L+E KKA L
Sbjct: 129 PYNVKYGLNHVVALIEAKKAKL 150


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +1

Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 438
           D+ P++++  +P LC    VPY     K  LG   + K  T   +  V  G +   SKV 
Sbjct: 78  DISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMSKVE 136

Query: 439 EAIKTNFNERYEELRK 486
           E     + E YEE+ K
Sbjct: 137 E-----YKESYEEIIK 147


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 354
           D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 56  DTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 244 CGHRHDVDPIELVLFLPALCRKMGVP 321
           C HR +  PI ++  +P+  R MGVP
Sbjct: 353 CKHRRENPPISILGTVPSGFRDMGVP 378


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 210  LCLCRIGWC 184
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 321 ILHCQGQVPPRCTCTPQDMHMLSSNKC 401
           +LHC  +   RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 54  TAKGLFKILEKYR 92
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,471
Number of Sequences: 5004
Number of extensions: 38048
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)