Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30222
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 134 5e-32
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 134 7e-32
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 93 2e-19
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 43 2e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 38 0.005
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 38 0.008
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 37 0.011
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 28 5.0
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 28 6.6
03_03_0006 - 13666961-13667755 27 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 134 bits (324), Expect = 5e-32
Identities = 56/86 (65%), Positives = 75/86 (87%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK+
Sbjct: 151 HDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKI 210
Query: 436 VEAIKTNFNERYEELRKHWGGGVLAT 513
+EAIK NFN++++E+RK WGGGV+ +
Sbjct: 211 LEAIKANFNDKFDEVRKKWGGGVMGS 236
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/81 (40%), Positives = 41/81 (50%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP +NQFT+TLDK A LFK+L KYRPE +P
Sbjct: 67 LKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKP 125
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
++ G N VT L+E+ KA L
Sbjct: 126 IVVKYGLNHVTYLIEQSKAQL 146
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 134 bits (323), Expect = 7e-32
Identities = 54/86 (62%), Positives = 76/86 (88%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK+
Sbjct: 136 HDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKI 195
Query: 436 VEAIKTNFNERYEELRKHWGGGVLAT 513
+EAIK+NFN++++E+RK WGGG++ +
Sbjct: 196 LEAIKSNFNDKFDEVRKKWGGGIMGS 221
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 98
LKVPP +NQFT+TLDK ++L++ + E
Sbjct: 68 LKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/86 (51%), Positives = 61/86 (70%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIELV++LPALCRKM +VH+KT + L LT V++ D+ FSK+
Sbjct: 135 HDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVKNEDKLEFSKI 180
Query: 436 VEAIKTNFNERYEELRKHWGGGVLAT 513
+EAIK NFN++++E+RK WGGGV+ +
Sbjct: 181 LEAIKANFNDKFDEVRKKWGGGVMGS 206
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/81 (40%), Positives = 41/81 (50%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP +NQFT+TLDK A LFK+L KYRPE +P
Sbjct: 51 LKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKP 109
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
++ G N VT L+E+ KA L
Sbjct: 110 IVVKYGLNHVTYLIEQSKAQL 130
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTNVESGDRASFSK 432
++ PI+++ +P LC + +PY V K L R TC L LT G+
Sbjct: 69 NISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--ED 126
Query: 433 VVEAIKTNFNERYEELRKHWGGGVLAT 513
V E +KT++++ E+ + G A+
Sbjct: 127 VKEKLKTDYDQVMSEVAEAGNGSDFAS 153
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 438
++ PI+++ +P LC + +PY V K L K TC L + +V
Sbjct: 69 NISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVK 128
Query: 439 EAIKTNFNERYEEL 480
E +K++++ E+
Sbjct: 129 EKLKSDYDHVVAEV 142
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S R +
Sbjct: 57 DAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINN 116
Query: 433 VVEAIK 450
+ AI+
Sbjct: 117 LKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 59 DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQN 118
Query: 433 VVEAIK 450
+ +AI+
Sbjct: 119 LKDAIE 124
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = -1
Query: 527 AGVGLVARTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPR 348
A L++ PP + S R ++ + + R P+ + A +R T
Sbjct: 17 AAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTWITG 76
Query: 347 RDLPLTMQYGT 315
D P T++YGT
Sbjct: 77 GDAPATVEYGT 87
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 515 LVARTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 405
L R+PPP LR + R + V A T E +A +P+
Sbjct: 25 LSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>03_03_0006 - 13666961-13667755
Length = 264
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 185 HHPIRHKHSHQAGREEEGALVVI 253
HH +RH+H H R G V+
Sbjct: 100 HHRVRHRHRHHRDRGRRGHAAVV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,876
Number of Sequences: 37544
Number of extensions: 309490
Number of successful extensions: 994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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