Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30222
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 131 4e-31
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 4e-31
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 41 7e-04
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 31 0.72
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.72
SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32) 31 0.72
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 30 1.7
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 5.1
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 5.1
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 5.1
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 6.7
SB_40209| Best HMM Match : Ank (HMM E-Value=0) 27 8.9
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 27 8.9
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 131 bits (317), Expect = 4e-31
Identities = 53/92 (57%), Positives = 73/92 (79%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + +
Sbjct: 68 HDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNL 127
Query: 436 VEAIKTNFNERYEELRKHWGGGVLATSPTPAS 531
+E++KTN+NER++E+RKHWGGG++ A+
Sbjct: 128 IESVKTNYNERFDEIRKHWGGGIMGPKSLAAT 159
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 66 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAHL 245
LFK+L KYRPET +P ++ G N +T LVE KKA L
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 131 bits (317), Expect = 4e-31
Identities = 53/92 (57%), Positives = 73/92 (79%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + +
Sbjct: 159 HDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNL 218
Query: 436 VEAIKTNFNERYEELRKHWGGGVLATSPTPAS 531
+E++KTN+NER++E+RKHWGGG++ A+
Sbjct: 219 IESVKTNYNERFDEIRKHWGGGIMGPKSLAAT 250
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/81 (41%), Positives = 41/81 (50%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP INQFTQ LD+ + LFK+L KYRPET +P
Sbjct: 74 LKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKP 133
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
++ G N +T LVE KKA L
Sbjct: 134 MLVKYGINHITSLVENKKAQL 154
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP LC VPY V+ K+ LG V R C N S +
Sbjct: 118 DTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGSQLKPQIQT 177
Query: 433 VVEAIK 450
+ AI+
Sbjct: 178 LQNAIE 183
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -2
Query: 388 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQWDQHHDDDH 245
L C+ C +Q H G + MVRP+ G EPA W + +H
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMWFHYSASEH 1236
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +1
Query: 295 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 474
A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263
Query: 475 EL 480
++
Sbjct: 1264 DI 1265
>SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
Length = 325
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 173 KEAQHHPIRHKHSHQAGREEEGALVV-IVMMLIPLSWFSSCQRYAVK 310
+ Q H + S Q R+ G + IV+ L +SWF SC Y +K
Sbjct: 207 RRIQTHNTNSRQSSQDKRQRSGTRTISIVIGLFVISWFPSCVYYFLK 253
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 331 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 480
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGK 342
DV PI+++ +P +C +PY V K
Sbjct: 123 DVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 322 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 480
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 506 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 399
R + +RS S RSL L ST+ EKEA+ D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 431 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 330
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 179 PLWWRLIFLGNLSFSSFPQPLFPG 108
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 275 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHA*L*QMWSL 409
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
Length = 885
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 167 STKEAQHHPIRHKHSHQAGREEEGALVVIVMMLI 268
ST HHP H H H ++VI++++I
Sbjct: 753 STTHHHHHPYHHHHHHHTTTIIIVIIIVIIIIII 786
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 412 DRASFSKVVEAIKTNFNERYEELRKHWGG 498
DRAS+ + EA + + ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 194 IRHKHSHQAGREEEGALVVIVMMLIPLSWFSS 289
IR + S G+EE+GAL I+ L L+ F+S
Sbjct: 377 IRAQMSQMVGKEEQGALFAILASLESLTNFTS 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,412
Number of Sequences: 59808
Number of extensions: 321879
Number of successful extensions: 1256
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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