Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30222
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 116 1e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 116 1e-26
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.022
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 36 0.030
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 7.9
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 7.9
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 7.9
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 7.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 116 bits (280), Expect = 1e-26
Identities = 48/85 (56%), Positives = 67/85 (78%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+
Sbjct: 160 HDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKL 219
Query: 436 VEAIKTNFNERYEELRKHWGGGVLA 510
VE + NF+ER+EE+RKHWGGGV++
Sbjct: 220 VETVNNNFSERHEEIRKHWGGGVMS 244
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/81 (41%), Positives = 44/81 (54%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP INQF LD +A+ FK+L+KYRPE+ RP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRP 134
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
NT+R G NT+T+LVE ++A L
Sbjct: 135 NTVRHGVNTITRLVETRRAQL 155
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 116 bits (280), Expect = 1e-26
Identities = 48/85 (56%), Positives = 67/85 (78%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+
Sbjct: 140 HDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKL 199
Query: 436 VEAIKTNFNERYEELRKHWGGGVLA 510
VE + NF+ER+EE+RKHWGGGV++
Sbjct: 200 VETVNNNFSERHEEIRKHWGGGVMS 224
Score = 58.0 bits (134), Expect = 5e-09
Identities = 34/81 (41%), Positives = 44/81 (54%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP INQF LD +A+ FK+L+KYRPE+ RP
Sbjct: 75 LKVPPTINQFRTALDSQSARQAFKLLDKYRPES--------------------TEVTKRP 114
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
NT+R G NT+T+LVE ++A L
Sbjct: 115 NTVRHGVNTITRLVETRRAQL 135
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 101
LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 178 LKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP LC VPY V+ K+ LG V R N S ++ K
Sbjct: 59 DAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQK 118
Query: 433 VVEAIK 450
+ E ++
Sbjct: 119 IKEDVE 124
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 143 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 24
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 438
+V PI++ +P +C + +PY + + +LG V + + L + + +V
Sbjct: 93 NVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKELYDEVA 152
Query: 439 EAIK 450
EA++
Sbjct: 153 EALR 156
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 16 LRSTNLPRHWTRLQLRA 66
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 212 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 81
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 212 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 81
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 212 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 81
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 449 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 309
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,392,075
Number of Sequences: 27780
Number of extensions: 233470
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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