Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30222
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 141 3e-34
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 137 5e-33
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 2e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.2
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.2
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 5.5
At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 7.3
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 7.3
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 141 bits (342), Expect = 3e-34
Identities = 60/86 (69%), Positives = 75/86 (87%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ FSK+
Sbjct: 150 HDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKI 209
Query: 436 VEAIKTNFNERYEELRKHWGGGVLAT 513
+EAIK NFN++YEE RK WGGG++ +
Sbjct: 210 LEAIKANFNDKYEEYRKKWGGGIMGS 235
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/81 (40%), Positives = 41/81 (50%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP +NQFT+TLDK A LFK+L KYRPE +P
Sbjct: 66 LKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKP 124
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
++ G N VT L+E+ KA L
Sbjct: 125 IVVKYGLNHVTYLIEQNKAQL 145
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 137 bits (332), Expect = 5e-33
Identities = 59/86 (68%), Positives = 73/86 (84%)
Frame = +1
Query: 256 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 435
HDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ FSK+
Sbjct: 149 HDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKI 208
Query: 436 VEAIKTNFNERYEELRKHWGGGVLAT 513
+EAIK NFN++YEE RK WGGG++ +
Sbjct: 209 LEAIKANFNDKYEEYRKKWGGGIMGS 234
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/81 (41%), Positives = 41/81 (50%)
Frame = +3
Query: 3 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRP 182
LKVPP +NQFT+TLDK A LFKIL KYRPE +P
Sbjct: 65 LKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKP 123
Query: 183 NTIRSGTNTVTKLVEKKKAHL 245
++ G N VT L+E+ KA L
Sbjct: 124 IVVKYGLNHVTYLIEQNKAQL 144
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 438
++ PI+++ LP LC + GVPY V K L K TC L ++ ++ +
Sbjct: 75 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEEL 134
Query: 439 EAIKTNFNERYEELRK 486
+KT++ + +++++
Sbjct: 135 AKLKTDYEQVSDDIKE 150
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 91 DAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQH 150
Query: 433 VVEAIK 450
+ +AI+
Sbjct: 151 LKDAIE 156
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 59 DAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQH 118
Query: 433 VVEAIK 450
+ +AI+
Sbjct: 119 LKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 59 DAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQH 118
Query: 433 VVEAIK 450
+ +AI+
Sbjct: 119 LKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRASFSK 432
D +P+E++L LP L VPY V K LG V R C +N S ++
Sbjct: 59 DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQH 118
Query: 433 VVEAIK 450
+ +AI+
Sbjct: 119 LKDAIE 124
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 194 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 36
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 330 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 494
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 233 LLLDQLGDCVCAGSDGVGPLWWRLI 159
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 415 RASFSKVVEAIKTNFNERYEE 477
++ F K +E IK++FNE YE+
Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 155 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 60
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,645
Number of Sequences: 28952
Number of extensions: 223692
Number of successful extensions: 723
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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