Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30221
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 28 2.2
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 3.0
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 5.2
09_04_0269 + 16265191-16265472,16265574-16266149 27 5.2
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 27 6.9
08_01_0054 - 367770-370166 27 6.9
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 26 9.1
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343... 26 9.1
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 170 TSILRKFSGRQHCVTVDCCCHGSPHAMRYAKHHP 271
T L + G C + C C PH + ++HHP
Sbjct: 24 TPSLGRVIGGSKCKCLMCVCDVDPHPLPPSRHHP 57
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +2
Query: 122 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 229
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 110 GSRARFQLSGNSGRKHSRCCTS 175
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 105 MESTDPQCHILQHRRPRLPL 46
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 167 CTSILRKFSGRQHCVTVDCCCHGSPHAMRYA 259
C + +RKFS +HC + D C G H R A
Sbjct: 156 CNAEVRKFS--KHCRSCDKCVDGFDHHCRLA 184
>08_01_0054 - 367770-370166
Length = 798
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 119 ARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSPHAMRYAKHHPFSTSLQD 292
+R LS G K SR L K GRQ H + HA H P ++S+ D
Sbjct: 2 SRRVLSAPDGTKVSRFN---LMKLQGRQEAAAAGTDSHHAHHAFDELLHRPTTSSIVD 56
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 89 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 196
GS DS+ G + R + N K C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704
>01_01_0464 -
3431298-3431315,3431586-3433339,3433340-3433589,
3433716-3434041,3434297-3434618
Length = 889
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1
Query: 270 G*CLAYLMAWGLPWQQQSTVT 208
G +A +++WG+P ++Q+TVT
Sbjct: 866 GLAIAVVVSWGIPIRKQATVT 886
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,093
Number of Sequences: 37544
Number of extensions: 194545
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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