Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30221
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               28   2.3  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.3  
SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.1  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   7.1  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        27   7.1  
SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19978| Best HMM Match : DUF229 (HMM E-Value=0.00021)                27   7.1  

>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 80  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR---KFSGRQ-HCVTVDCCCHGSPHA 247
           + W  VDSI+ S+A+F  S  +   H    T  LR    F  +Q   V +D  C+ +  A
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLRFHGHFGFQQADRVVLDALCYRN-IA 323

Query: 248 MRYAKHHP 271
           +   + HP
Sbjct: 324 IEAVEKHP 331


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 68  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 187
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
 Frame = +2

Query: 65  RCC---NIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHG 235
           +CC   N  HW         RA F   G S  +     T + R    + +C+ +  CC  
Sbjct: 175 KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCRDGYFMTGLYRGNCDQIYCIEMFKCCKM 234

Query: 236 SPHAMRYAKHHPFSTSLQDRTFSVLFGIKMHLNF 337
            P   +        T + D T + L  +  +L +
Sbjct: 235 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 268


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 80  WHWGSVDSISGSRARFQLSGNSGRKHSR 163
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 120 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSL 4
           +REP    S  PQ H+L  +R  L + ++   CS   CS+
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSM 96


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 167 CTSILRKFSGRQHCVTVDCCCHGSPHAMRYAKHHPFSTSLQDRTF 301
           CTSI+   SG     +   CC G      Y  +HP   +L DR+F
Sbjct: 45  CTSIV---SGIDAGPSPRTCCDGFGFKNLYGSYHPPVLTLTDRSF 86


>SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 298 GPILERCRERVMFSIPHGVGATMAAAVN 215
           GPI+  CR R  F I   +G+T+   +N
Sbjct: 92  GPIINYCRNRFTFHIWAIIGSTVLGRIN 119


>SB_19978| Best HMM Match : DUF229 (HMM E-Value=0.00021)
          Length = 552

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 212 TVDCCCHGSPHAMRYAKHHPFSTSLQDRT-FSVLFGIKMHLNF 337
           T +   +G P+ M+ +K  PFS   +  T + V+ G++  L F
Sbjct: 478 TKNVIIYGEPYYMQVSKQLPFSIRAEPNTVYFVISGVRRMLEF 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,068
Number of Sequences: 59808
Number of extensions: 218689
Number of successful extensions: 481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)