Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30221
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    31   0.36 
At4g15840.1 68417.m02409 expressed protein                             29   0.82 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   3.3  
At5g07790.1 68418.m00892 expressed protein                             27   4.4  

>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 167 CTSILRKFSGRQHCV----TVDCCCHGSPHAMRYAKHH---PFSTSLQDRTFS 304
           C SI +KF     C+     +   C G PH +R ++HH    F++SL   TFS
Sbjct: 203 CASI-KKFDPTYICIQCVFAIHKDCRGFPHVIRISRHHHRISFTSSLLSGTFS 254


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 104 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 196
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 14  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 112
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 35  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 178
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,650,609
Number of Sequences: 28952
Number of extensions: 143614
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)