Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30220
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.51 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 49  QLGVWACEPNQAQNG--CKIYGNSCSC 123
           +L V  C+PN  QNG  C    NS SC
Sbjct: 220 ELNVDDCKPNPCQNGGTCHDLVNSFSC 246



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 258 GFTCKCEGTGYYGKRCE 308
           G  C C   G+YGK CE
Sbjct: 359 GHKCTCP-EGFYGKNCE 374



 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 199 NICSRTPCIRGICTQTIQDPDSLVNAKAP-GIMEKDVKESV 318
           N+C  +PC+ G    T QD  +      P G   KD  E V
Sbjct: 63  NLCDSSPCLNG---ATCQDHTTHYTCHCPYGYTGKDCGEYV 100


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/46 (21%), Positives = 18/46 (39%)
 Frame = -1

Query: 569 LFFTYLIVFRKVVLGTTNFNYRKYYYIAYNTQCQYEYYKNIVMKNY 432
           LF  Y I +        NF Y    ++ + + C Y     I+  ++
Sbjct: 153 LFTVYYIYYSVHEASIINFGYTLAKFMIFTSTCIYTNLLRIIEADF 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,045
Number of Sequences: 336
Number of extensions: 3668
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)