Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30220
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    33   0.044
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.95 
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    28   1.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   2.2  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.1  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   6.7  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.7  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   6.7  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   8.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.8  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +3

Query: 159 KTFLFECTQREKFKHMFPYALHS----WHMHADNPGP-GFTCKCE-GTGYYGKRCERICP 320
           K  LF+  +    ++ F YA++S    W + A +  P  FTC+      + G R E++  
Sbjct: 227 KGHLFDIEKELGIENQFKYAIYSDGKAWRVQAVSIDPTSFTCRLPLPEPWRGIRDEKLSE 286

Query: 321 ATAIPGTFFPH 353
            T IPG  F H
Sbjct: 287 LTGIPGCIFVH 297


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 220 KAYGNICL-NFSL*VHSNKNVLSYKCTQFYNRNHNCTSY 107
           + +G+ CL NFSL  + N  ++ Y   + ++ NH C S+
Sbjct: 40  RTHGHYCLLNFSLRENKNYLIIVYLPIEGFSANHMCISH 78


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -1

Query: 356 LMWEERSWYCCSWTDSFTSFSIIPGAFAFTSESGSWIVCVHMPRMQGVREHMFELLSLS 180
           L W   + + C        F I      F  + GSW +       QGVRE +FE++ LS
Sbjct: 327 LQWVRHTLWSCLEEGEDEEFMIYRSKGIFNKDDGSWYI------FQGVRE-VFEIMPLS 378


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 440 KNYF-IFHIYF*KK-RNIGISFQSLLDNDALMWEERSWYCCSWTDSFTSFS 294
           KNY+   H Y   + RNI + F +LL  D++ WE   + C   T+  T+ S
Sbjct: 487 KNYYETIHRYETNRLRNIALFFANLLSTDSIGWE--VYDCVRLTEDDTTAS 535


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 159 KTFLFECTQREKFKHMFPYALHSWHMHADNPGPGFTCKCEGTGYYGKRCERIC 317
           +  LFECT++E + H   +   ++     +P    T +  G G+   R E+ C
Sbjct: 282 RNLLFECTEQELYNHFRQFGPLAYAKLVKDPA---TDRSLGRGFIKFRYEKDC 331


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/80 (21%), Positives = 31/80 (38%)
 Frame = -2

Query: 280 PSHLQVNPGPGLSACICHECKAYGNICLNFSL*VHSNKNVLSYKCTQFYNRNHNCTSYRI 101
           P H++V PG  + + +  +  AY NI    +  + S +           + +    S  I
Sbjct: 149 PKHVEVGPGRQIHSRVKVQYFAYANIIYQSADKLRSRRECQEINVLPSISPSSFLDSPSI 208

Query: 100 FCTHSEPDWAHTPKRPIESR 41
            C   +PD     +R   +R
Sbjct: 209 MCVSKQPDLKKDRQRKSATR 228


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 596 FILIHRIKILFFTYLIVFRKVVLGTTNF-NYRKY-YYIA 486
           F + HR++ ++     + R +   TTNF  + K+ YY+A
Sbjct: 33  FCVHHRVRYIYVPRHCLLRSLTYATTNFTKFSKFVYYLA 71


>SPAC26F1.07 |||2-methylbutyraldehyde reductase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 52 LGVWACEPNQAQNGCK 99
          LG W  EPNQ +N  K
Sbjct: 29 LGTWRSEPNQTKNAVK 44


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 1   VRNMRILGILAAVACFQLGV 60
           +R ++   +LA VAC+QLGV
Sbjct: 87  LRQIQFFVLLALVACYQLGV 106


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 554 LIVFRKVVLGTTNFNYRKYYYIAYNTQCQYEYYKNIVMKNYFIF 423
           L +FRK V+G  +F   + Y   Y   C  E Y  +++K    F
Sbjct: 793 LFIFRKCVIGIKSFEKLQSYVFTY--YC--ERYPKLILKRVLRF 832


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 187 ERSSNICSRTPCIRGICTQTIQDPDSLVNAKAPGIMEKDVKESVQLQQYQERSSHMSASL 366
           +R  +  ++ P +R   T    +   +   +AP   E     S  L+   ++SSHMSASL
Sbjct: 22  QRVFSCLTQFPMLRHSSTAAKNNVSMISKFQAP---EDKFFPSFSLKSMPKQSSHMSASL 78

Query: 367 SNN 375
            N+
Sbjct: 79  LNS 81


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 223 IRGICTQTIQDPDSLVN 273
           + GIC++TIQ  DS VN
Sbjct: 28  LSGICSRTIQHADSQVN 44


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 121 NCTSYRIFCTHSEP--DWAHTPKRPIESRRQQLR-CRGYA 11
           NC +Y   CT+ +P     H P++ IE    +L+  RG A
Sbjct: 34  NCIAYNYECTYGQPFKRLRHAPEKYIEFLELRLKYLRGLA 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,557
Number of Sequences: 5004
Number of extensions: 53978
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)