Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30220
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    29   3.9  
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717...    28   5.2  
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313     28   5.2  
05_01_0353 + 2765112-2765156,2765432-2766250                           27   9.1  
02_02_0159 + 7299685-7300572                                           27   9.1  

>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 554 LIVFRKVVLGTTNFNYRKYYYIAYN 480
           LI +R  V GTT FNY  YY   Y+
Sbjct: 170 LICYRDPVPGTTKFNYPFYYASVYD 194


>07_01_0863 +
           7177443-7177471,7178300-7178399,7178628-7178899,
           7179143-7179794,7179886-7180085,7180317-7180417,
           7180559-7181697
          Length = 830

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 277 SHLQVNPGPGLSACICHECKAYGNIC 200
           SH+ VNPG  L+ C C   +  GNIC
Sbjct: 565 SHVIVNPGSDLALCDCSWSRK-GNIC 589


>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
          Length = 739

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 189 EKFKHMFPYALHSWHMHADNP--GPGFTCKCEGTGYYG 296
           E +K M  YA  S +    N   GPG+TC C   GY G
Sbjct: 253 EAWKKMDSYACKSTNSECFNSTNGPGYTCNC-SKGYEG 289


>05_01_0353 + 2765112-2765156,2765432-2766250
          Length = 287

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 79  QAQNGCKIYGNSCSCGYGCKTEYIYRTRRSCLNALRERSSNICSRTP 219
           Q  NGC+ +G      +G   E + R ++ CL + R R +      P
Sbjct: 3   QIDNGCEEWGFFQLVNHGVPKELLDRVKKVCLESYRLREAAFMESEP 49


>02_02_0159 + 7299685-7300572
          Length = 295

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 219 LHSWHMHADNPGPGFTCKCEGTGYYGKRCERICPATAI 332
           L ++H H  N G GF+      G     C  I PA A+
Sbjct: 64  LVTFHHHHHNHGHGFSASAAAAGSSSLSCRGIDPALAV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,796
Number of Sequences: 37544
Number of extensions: 322163
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)