Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30220
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 31 0.50
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 31 0.50
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 30 1.5
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 30 1.5
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 30 1.5
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 30 1.5
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 2.7
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 2.7
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 29 3.5
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ... 29 3.5
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 28 6.2
U23179-6|AAK68205.1| 341|Caenorhabditis elegans Serpentine rece... 28 6.2
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 28 6.2
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 28 6.2
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 28 6.2
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 28 6.2
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical p... 27 8.2
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 8.2
U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 8.2
AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical... 27 8.2
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 MHADNPGPGFTCKCEGTGYYGKRCERICP 320
MH + P C+C+ G+ GKRCE+ CP
Sbjct: 420 MHTSDHSP--VCQCKN-GFIGKRCEKECP 445
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 MHADNPGPGFTCKCEGTGYYGKRCERICP 320
MH + P C+C+ G+ GKRCE+ CP
Sbjct: 420 MHTSDHSP--VCQCKN-GFIGKRCEKECP 445
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 67 CEPNQAQNGCKIYGNSCSCGYGCKTEYIYRTRRSCLNALRERSSNICSRTPCIRGIC 237
C + Q C + + + GY C + ++ T R+C N + E C+ +PC+ G C
Sbjct: 260 CSADLGQGLCINWQSDFTDGYACICKPLW-TGRNCENPVPEA----CTPSPCLNGTC 311
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 2263 NTNPGFFCECRNDGLKGARCQ 2283
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 2263 NTNPGFFCECRNDGLKGARCQ 2283
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
protein W02B9.1a protein.
Length = 1223
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 566 NTNPGFFCECRNDGLKGARCQ 586
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 2263 NTNPGFFCECRNDGLKGARCQ 2283
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 2263 NTNPGFFCECRNDGLKGARCQ 2283
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 246 NPGPGFTCKCEGTGYYGKRCE 308
N PGF C+C G G RC+
Sbjct: 566 NTNPGFFCECRNDGLKGARCQ 586
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 210 PYALHSWHMHADNPGPGFTCKCEGTGYYGKRCE 308
PY L+ D P G C C GT + G+RCE
Sbjct: 2012 PYCLNEGKC-LDLPN-GAACDCSGTNFIGRRCE 2042
>Z68316-2|CAA92681.1| 352|Caenorhabditis elegans Hypothetical
protein K08E4.3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/80 (21%), Positives = 33/80 (41%)
Frame = +1
Query: 16 ILGILAAVACFQLGVWACEPNQAQNGCKIYGNSCSCGYGCKTEYIYRTRRSCLNALRERS 195
+ G++ A + + P ++ GC+ +G + C + C ++Y Y R +
Sbjct: 175 VTGMIGMTAKTVAELTSFNPRLSEGGCEWFGTAPLCNFPCPSDYDY-IRANNGRCSSWWL 233
Query: 196 SNICSRTPCIRGICTQTIQD 255
S CS P C+ + D
Sbjct: 234 SGFCSPDPSFGKPCSTILGD 253
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 252 GPGFTCKCE-GTGYYGKRCERICPATAIPGTFFPHEC 359
G G KC+ +GY G++CE+IC G H+C
Sbjct: 604 GSGLLSKCDCPSGYTGEKCEQIC-RNGYWGVDCAHKC 639
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 267 CKCEGTGYYGKRCERIC 317
C+C+ GYYG C+R+C
Sbjct: 738 CRCK-PGYYGHHCKRMC 753
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 252 GPGFTCKCE-GTGYYGKRCERICPATAIPGTFFPHEC 359
G G KC+ +GY G++CE+IC G H+C
Sbjct: 604 GSGLLSKCDCPSGYTGEKCEQIC-RNGYWGVDCAHKC 639
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 267 CKCEGTGYYGKRCERIC 317
C+C+ GYYG C+R+C
Sbjct: 738 CRCK-PGYYGHHCKRMC 753
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 261 FTCKCEGTGYYGKRCERICPATAIPGTFFPHEC 359
+ C C+GTG+ G+ C A P EC
Sbjct: 1541 YECVCDGTGFEGRNCTTDINECANPNNCINGEC 1573
>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
protein Y73F8A.5 protein.
Length = 1019
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 256 GPGLSACICHECKAYGNICLNFSL*VHSNKNVLSYKCTQFYNRNHNCTSYRIF 98
G GL++ C A G I LN + N + +Y + F R+ N + R+F
Sbjct: 649 GQGLTSNDGVSCTAMGKIQLNQGIGGKGNDSSFTYDFSPFVGRSWNISGVRVF 701
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 605 LKCFILIHRIKILFFT---YLIVFRKVVLGTTNFNYRKYYYIA 486
LK F+L I + F YL+V +K+++ TT N Y++ A
Sbjct: 132 LKIFLLKTPIPVFFIATAIYLVVKQKIIVDTTTHNNWYYFFDA 174
>U23179-6|AAK68205.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 1 protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 323 SWTDSFTSFSIIPGAFAFTSESGSWIV 243
S+ DSF SF +IP A T S WI+
Sbjct: 165 SFNDSFISFILIPATTAQTFNSYCWIL 191
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 237 HADNPGPGFTCKCEGTGYYGKRCERICP 320
H +P G C CE GY+GK C CP
Sbjct: 695 HGCDPTTG-ECICE-PGYHGKTCSEKCP 720
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 264 TCKCEGTGYYGKRCERICP 320
TC C +G+ G+RCE+ CP
Sbjct: 178 TCICT-SGFQGERCEKPCP 195
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 237 HADNPGPGFTCKCEGTGYYGKRCERICP 320
H +P G C CE GY+GK C CP
Sbjct: 695 HGCDPTTG-ECICE-PGYHGKTCSEKCP 720
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 264 TCKCEGTGYYGKRCERICP 320
TC C +G+ G+RCE+ CP
Sbjct: 178 TCICT-SGFQGERCEKPCP 195
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 237 HADNPGPGFTCKCEGTGYYGKRCERICP 320
H +P G C CE GY+GK C CP
Sbjct: 695 HGCDPTTG-ECICE-PGYHGKTCSEKCP 720
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 264 TCKCEGTGYYGKRCERICP 320
TC C +G+ G+RCE+ CP
Sbjct: 178 TCICT-SGFQGERCEKPCP 195
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 237 HADNPGPGFTCKCEGTGYYGKRCERICP 320
H +P G C CE GY+GK C CP
Sbjct: 695 HGCDPTTG-ECICE-PGYHGKTCSEKCP 720
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 264 TCKCEGTGYYGKRCERICP 320
TC C +G+ G+RCE+ CP
Sbjct: 178 TCICT-SGFQGERCEKPCP 195
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 253 PGLSACICHECKAYGNICLNFSL*VHSNKNVLSYKCTQFYNRNHNCTSYRI 101
P C C A+ F HS K+V+S C Y +H C RI
Sbjct: 16 PHFGGVSCRACAAF------FRRYFHSKKSVISCTCQIRYQNSHPCRECRI 60
>Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical
protein F57B1.1 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = -1
Query: 614 IIYLKCFILIHRIKILFFTYL--IVFRKVV----LGTTNFNYRKYYYIAYNTQCQYEYYK 453
I++ I IHR+ + FF I F K + +G CQYEY +
Sbjct: 84 ILFSNLIIAIHRMFVFFFKKHTDIAFEKPITYFWMGMVWVLSAFVVVSMIMNNCQYEYDE 143
Query: 452 NIVMKNYFI 426
I+MK+Y +
Sbjct: 144 RILMKHYVL 152
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Frame = +1
Query: 58 VWACEPNQAQNGCKIYGNSCSCGYGCKTEYIYRTR-RSC----LNALRERSSNICSRTPC 222
VW C P +A +CG G Y Y ++ + C N S+N +R C
Sbjct: 659 VWGCCPTKAYTCTLSPHKGVTCGSGSSYRYYYNSQTQECESYQYNGCDGNSNNFATREDC 718
Query: 223 IRGIC 237
G C
Sbjct: 719 -EGYC 722
>U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical
protein R02F2.7 protein.
Length = 693
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 22 GILAAVACFQLGVWACEPNQAQNGCKIYGNSCSCGYGCKTEYIYRTRRSCLNA 180
GIL+ C QL E N A+N K C C + IY S L +
Sbjct: 249 GILSESTCSQLLAKVIEDNLAKNELKQLARRCQTAEVCMSPCIYYAMISVLRS 301
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 253 PGLSACICHECKAYGNICLNFSL*VHSNKNVLSYKCTQFYNRNHNCTSYRI 101
P C C A+ F HS K+V+S C Y +H C RI
Sbjct: 18 PHFGGVSCRACAAF------FRRYFHSKKSVISCTCQIRYQNSHPCRECRI 62
>AF016686-13|AAB66233.1| 470|Caenorhabditis elegans Hypothetical
protein R07C3.3 protein.
Length = 470
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 169 KNVLSYKCTQFYNRNHNCTSYRIFCTHSEPDWAHT 65
KN+ + Y++NH Y++ CT P W ++
Sbjct: 433 KNLYENLVSVQYHKNHRNPDYKLNCTSDFPPWNYS 467
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,306
Number of Sequences: 27780
Number of extensions: 320529
Number of successful extensions: 1070
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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