Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30220
         (620 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46970.1 68416.m05100 starch phosphorylase, putative similar ...    31   0.81 
At3g30560.1 68416.m03867 hypothetical protein                          30   1.4  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    29   2.5  
At4g14180.1 68417.m02189 expressed protein ; expression supporte...    27   7.6  

>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
           alpha-glucan phosphorylase, H isozyme SP:P32811 from
           [Solanum tuberosum]
          Length = 841

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 374 LLDNDALMWEERSWYCCSWTDSFTSFSIIPGAFAFTSESGSW 249
           L+D++ L W+E +W   S T ++T+ +++P A    S+S  W
Sbjct: 355 LMDDNGLGWDE-AWDVTSKTVAYTNHTVLPEALEKWSQSLMW 395


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = -1

Query: 539  KVVLGTTNFNYRKYYYIAYNTQCQYEYYKNIVMKNYFIFHIYF*KKRNIGISFQSLLDND 360
            K + G  +  YR   Y         +Y   I   N++ FH Y  K   I + F+S L + 
Sbjct: 885  KTIEGVVHKTYRDACYALGLLDDDKDYINGIEEANFWCFHKYVRKLFVIMLIFES-LSSP 943

Query: 359  ALMWEERSW 333
            A++W E +W
Sbjct: 944  AVVW-EHTW 951


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 295 EKDVKESVQLQQYQERSSHMSASLSNN 375
           E+  K S+Q+Q+YQE+ S + +SL+ +
Sbjct: 181 EEGKKSSIQMQEYQEKVSKLESSLNQS 207


>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -1

Query: 317 TDSFTSFSIIPGAFAFTSESGSWIVCVHMPRMQGVREHMFELLSLSAFK--QERLVL*MY 144
           TDS      +   F + S+  +    + +   + V +++FE+L LSA    ++RLV+   
Sbjct: 312 TDSEVQIKTLDLIFHYISQESTPSKQIQVMVEENVADYIFEILRLSAEHSFRKRLVIGFP 371

Query: 143 SVLQP*PQLHELPYILHPF 87
           SV++    + E+P   HPF
Sbjct: 372 SVIRVLHYVGEVP--CHPF 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,814
Number of Sequences: 28952
Number of extensions: 273624
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)