Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30219
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.28 
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    29   0.64 

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 148 GSNYNEDEKGDEGFSRNQRWEHXXXXXXXXXXXXMKVMEDVVIDAATMA-PEDHHEIDEV 324
           G++YNE       F  N   EH            M+V + V  +   M  PE HH I+ V
Sbjct: 237 GASYNE-------FCVNHSPEHYLQKLSAARAQFMEVYDTVKAEVEKMVTPEQHHLINNV 289

Query: 325 VVITETLDEAVNPFQIS 375
           V +   + +A N + ++
Sbjct: 290 VRLVSRMPDATNSYAMN 306


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 369 LKRIYCLV*SFCYDHHLVDFVVILWSHCCRVD 274
           L+R  C     C+DHH  D V +L  HC  V+
Sbjct: 234 LQRNICQGNLSCWDHHYSDDVFLLIRHCLEVN 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,675
Number of Sequences: 5004
Number of extensions: 28192
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)