Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30219
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    29   2.0  

>03_05_0640 - 26326832-26327166,26327295-26327529,26327665-26327908,
            26328389-26328507,26328860-26329050,26329133-26329220,
            26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 56   LSLILIMKISNIHKMMKNIMRKNLM-IKIMKKEVITMKTRKVMKDFLEISDGSMV 217
            ++L  +   ++I  +   + RK+L  IKI  K V ++++ K +KD +E SDG MV
Sbjct: 874  IALSFVKDANDIKYLKTYLSRKSLEHIKIFAK-VESLESLKNLKDIIEASDGVMV 927


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,426
Number of Sequences: 37544
Number of extensions: 149998
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)