Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30219
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_18119| Best HMM Match : Gemini_C4 (HMM E-Value=5.1)                 28   4.8  
SB_32603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 32  LMTMVTINLSLILIMKISNIHKMMKNIMRKN 124
           L+T++TIN   +LI+ I N HK++  I+  N
Sbjct: 356 LLTVITINTHKLLIVIIINTHKLLTVIIINN 386



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +2

Query: 32  LMTMVTINLSLILIMKISNIHKMMKNIM--RKNLMIKIMKKE--VITMKTRKVM 181
           L+T++TIN   +LI+ I N HK++  I+   K L++ I+     ++ + T K++
Sbjct: 135 LLTVITINTHKLLIIIIINTHKLLTVIIITHKLLIVIIITHTLLIVIINTHKLL 188


>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 715

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +2

Query: 26  LPLMTMVTINLSLILIMKISNIHKMMKNIMRKNLMIKIMKKEVITMKTRKVMKDFLEISD 205
           L +MT+ T+ L+++  MKI  +   +  +M   + +  M   ++T+ T  +M D ++ +D
Sbjct: 465 LTMMTLTTMMLTMMTSMKIMLMMMTLMTMMLMMMTLMPMMLMMMTLMTMMLMIDDIDAND 524


>SB_18119| Best HMM Match : Gemini_C4 (HMM E-Value=5.1)
          Length = 146

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 381 LLTNLKRIYCLV*SFCYDHHLVDFVVILWSHCCRVDYH 268
           +LT+++R +  V  F YDH  VD   +   H C VD H
Sbjct: 1   MLTSIRRRFNTVVLFLYDHANVDKASV--QHSCLVDDH 36


>SB_32603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 381 LLTNLKRIYCLV*SFCYDHHLVDFVVILWSHCCRVDYH 268
           +LT+++R +  V  F YDH  VD   I   H C VD H
Sbjct: 53  MLTSIRRRFNPVVLFLYDHANVDKASI--QHSCLVDDH 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,217
Number of Sequences: 59808
Number of extensions: 181049
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)