Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30219
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.94 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 32  LMTMVTINLSLILIMKISNIH 94
           L TM+ + LS+++ + I N+H
Sbjct: 303 LFTMILVGLSVVITIVILNVH 323


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 42 IVIKGRPWWQ 13
          IVI  RPWW+
Sbjct: 69 IVIDKRPWWE 78


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 32  LMTMVTINLSLILIMKISNIH 94
           L TM+ + LS+ + + + N+H
Sbjct: 317 LFTMILVTLSIWITVCVLNVH 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,599
Number of Sequences: 438
Number of extensions: 2162
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)