Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30218
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    35   0.050
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    30   1.4  
07_03_0754 - 21256860-21257702                                         28   5.7  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    28   5.7  
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323...    28   5.7  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    28   7.6  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    28   7.6  
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    28   7.6  

>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 144 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKRKPKALIL 275
           H H   +PPHL R+    + A P R  LH   PT  R P AL L
Sbjct: 20  HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLRLPAALPL 63


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 19  KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 129
           ++L +GDF   L LL++Y P +I+ L  + +KLR  +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462


>07_03_0754 - 21256860-21257702
          Length = 280

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 470 NGFYLGKLRGLLGTVTTSLTMTSGYLMERSALRKASSVTRTV 595
           +GF LGKL+G+LG+V        G  M    LR+   + R V
Sbjct: 228 DGFGLGKLQGILGSVAGQAAEMDG--MYAGMLRRLEKLAREV 267


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 320 PVHFLSIR*YSALIFQNKSLGFPF*SWISSVKFLSTWSCAN 198
           P  F  +R    L+  N  L  P  +W SS+KFL     +N
Sbjct: 466 PNWFSKLRNLQILVLHNNQLNGPIPTWTSSLKFLKYVDISN 506


>01_06_1732 -
           39531577-39531726,39531809-39531925,39532175-39532354,
           39532704-39532802,39533571-39533675,39534046-39534138,
           39534243-39534326
          Length = 275

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 19  KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 117
           K+L +GDF   L LL+ Y P +I+ L  V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 19  KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 135
           ++L +GDF   + LL+ Y P +I+ L  + ++LR  V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 467  ANGFYLGKLRGLLGTVTTSLTMTSGYLMERSALRKASSVTRTVWP 601
            A G ++ K +GL  ++TT   M S    +RS LR+   +T + WP
Sbjct: 1055 AKGNHVSKKKGLFRSLTTGTGMES----KRSLLRQTVDLTISHWP 1095


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 133 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 222
           NGQH+  +D R   F G  RY   H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,474
Number of Sequences: 37544
Number of extensions: 377109
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)