Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30218
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         39   0.004
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   38   0.005
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   31   0.83 
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   30   1.5  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)                      28   7.7  
SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 139 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQN 252
           +H  TFDGRH+ F G C Y LA D +  +    + +QN
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQN 259



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 HIFTFDGRHLTFPGNCRYVL 201
           H  +FDG+  TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 73   RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLI 240
            RPR+  P    P    A++    H+ TFD  +  FPG     C YVLA D  D  FT++ 
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687

Query: 241  Q 243
            Q
Sbjct: 1688 Q 1688


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 100  EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNGNPR 264
            + P      +V   H  TFD R  +  G C YVL+ H H      + FT+ I++ +   R
Sbjct: 843  DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSR 902

Query: 265  LL 270
             L
Sbjct: 903  QL 904


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 142 HIFTFDGRHLTFPGNCRYVLAHD 210
           H  TFDGR  +F G C YV++ D
Sbjct: 33  HYKTFDGRLYSFQGGCNYVMSTD 55


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 147  LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 242
            L VR+ PP L RKL+ R+   P+R  L    P
Sbjct: 978  LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 523 PYDDFRLPNGKICTSESEFGNAYRLA----RSCXQVQAP 627
           P DDF + NG+   S+ EFG ++ L     R C Q +AP
Sbjct: 191 PSDDFMMKNGRYARSDREFGKSWSLGGHRRRPCLQ-RAP 228


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 14  SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 190
           +S+S TP I+ T    +  T L+A+T        + L+  T + ++++T +AT+PS  T 
Sbjct: 691 TSTSQTPPIATTP-SLTTQTTLIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 747

Query: 191 ATYWRTTTSIET 226
            T   TT S+ T
Sbjct: 748 TTLIATTPSLTT 759



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 14  SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 190
           S+++ TP I+ T+   +  T  +A+T        + L+  T + ++++T +AT+PS  T 
Sbjct: 677 SATTQTPPIASTTDTSTSQTPPIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 734

Query: 191 ATYWRTTTSIET 226
            T   TT S+ T
Sbjct: 735 TTLIATTPSLTT 746


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 104 CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSR 232
           CR ++     T NTSS S V+T+ S  TVA   RT TS  ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174


>SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)
          Length = 246

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = +1

Query: 178 PGNCRYVLAHDHVDRNFTLLIQLQNGNPRLLFWKIRAEYHRIER---KWTGY---SERSF 339
           P N +  L+ +H D ++   + LQ   P    +  R      +R   K+ G+        
Sbjct: 15  PSNSKVALSIEHCDFSWDKHMFLQPAAPHRSTFGFRHTQDNSKRASPKYAGFVLVKRADS 74

Query: 340 QRIPDHRKGCVRFPSTKQQNRCWLIV 417
            +    R G +R P T++QN+ W I+
Sbjct: 75  NKSRKSRPGSLRQPITEKQNKSWRIL 100


>SB_2468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 163 RHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGN 258
           R+ T P     V+ H ++DRN + ++ L  GN
Sbjct: 246 RNSTIPSKLCGVILHVNIDRNVSFVVPLHRGN 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,722
Number of Sequences: 59808
Number of extensions: 435319
Number of successful extensions: 1300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)