Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30218
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13670.1 68416.m01722 protein kinase family protein contains ...    31   0.90 
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   3.6  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   3.6  
At1g27020.1 68414.m03294 expressed protein                             29   3.6  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   4.8  
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    28   6.3  
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF...    28   6.3  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   6.3  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    28   6.3  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   6.3  
At3g11800.1 68416.m01446 expressed protein                             27   8.4  
At3g01780.1 68416.m00118 expressed protein est hit,                    27   8.4  
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC...    27   8.4  

>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 133 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGNPRLLFWKIRAEYHRIERK 312
           +GQH+  +D R   F G  RY  AH H+ R  +    L++    L+F       HR    
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIF------LHRGRLP 354

Query: 313 WTGY 324
           W GY
Sbjct: 355 WQGY 358


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 320  AILNGASKGFPIIEKDVFAFR-QPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGKLR 496
            A++NG  K   + E +V   + QP + +     YG  +   +K EV   +A   +   L+
Sbjct: 722  AVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK 781

Query: 497  GLLGTVTTSLTMTSGYLMERSALRKASSVTRTV 595
            GLL    T   +  G+  +      +  +TR +
Sbjct: 782  GLLANTATYNMLIRGFCRQGRIEEASELITRMI 814


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 520 EPYDDFRLPNGKICTSESEFGNAYRLARSCXQVQAP 627
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 520 EPYDDFRLPNGKICTSESEFGNAYRLARSCXQVQAP 627
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 458 YIEANGFYLGKLRGLLGTVTTSLTMTSGYLMERSALRKASSVTRTVWPAA 607
           Y E NGF L K  G+L     SL +    + E+  +  A  VT+ V PA+
Sbjct: 214 YFEENGFELNKDGGVLKVSEDSLLLQVSAMSEKLVVEFADGVTQIV-PAS 262


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 284 ERSIIELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 436
           E   ++L E G++  NG   G P  E++   F +  N+ G G    +  +C
Sbjct: 70  EDDYVKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120


>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 249 LKLD*QREV---SIDVVVRQYVATVSWEGEVATVEREDVLTVHN 127
           LK    REV   S+ +V+  +   VSWEGE A  + +D    H+
Sbjct: 340 LKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At4g37710.1 68417.m05338 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 123

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 484 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 314
           +VE V+F V   +   A +HETVQ     T   A    S    FD   S+G  S QN  +
Sbjct: 60  RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119

Query: 313 I 311
           I
Sbjct: 120 I 120


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 19  KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 120
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 560 ALRKASSVTRTVWPAAV--HRCKRPNTPITS 646
           AL   SSV  TV P  V  HRCKR  T  TS
Sbjct: 57  ALASGSSVNLTVSPENVKMHRCKRSTTSHTS 87


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 220 RNFTLLIQLQNGNPRLLFWKIRAEYHRIE-RKWTGYSER-SFQRIPDHRKGCVRFPSTKQ 393
           ++FTL + L+NG P L     ++  H+ + R+ + +SE+ S   +P   K   +  S ++
Sbjct: 49  KSFTLELILENGTPMLSLVSTQSTSHKSQKRECSKHSEKESISAVPSKGKKNRKARSNRE 108

Query: 394 QNR 402
           + R
Sbjct: 109 ERR 111


>At3g11800.1 68416.m01446 expressed protein
          Length = 246

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 208 DHVDRNFTLLIQLQNGNPRLLFWK 279
           +H+  +FTL+++ Q G    +FWK
Sbjct: 135 NHIVTSFTLVLEFQKGRLENMFWK 158


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 220 RNFTLLIQLQNGNPRLLFWKIRAEYHRIERKWTGYSERSFQRIPDHRKGCVRF--PSTKQ 393
           RN      +     RL+  +I+   +  ERKW G SE        H K  V+F  PS  Q
Sbjct: 668 RNHAAADTVSKHQTRLILQRIKYVSNLPERKWAGVSETRGDYPFSHHKLTVQFYEPSAAQ 727

Query: 394 QNR 402
             +
Sbjct: 728 DRK 730


>At2g36640.1 68415.m04494 late embryogenesis abundant protein
           (ECP63) / LEA protein nearly identical to to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 448

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = +2

Query: 464 EANGFYLGKLRGLLGTVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPIT 643
           EA G   G L  +   + + LTM S  + E  A R+     RTV    V   K P    T
Sbjct: 360 EAKGTIFGALGNVTEAIKSKLTMPSDIVEETRAAREHGGTGRTVVEVKVEDSK-PGKVAT 418

Query: 644 S 646
           S
Sbjct: 419 S 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,780
Number of Sequences: 28952
Number of extensions: 297295
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)