Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30215
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   1.8  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   3.1  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    26   5.5  
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.2  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   7.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   7.2  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.5  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 41  DYQSNLLIMSNDYGFNSDDSP---NKTNSHLQLPSPIITRRNRTASTSE 178
           D+ S L   S+++   +  SP    KTN   +LPS +  +  RT   S+
Sbjct: 552 DHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSK 600


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 336 ISTLPNPT*VRKISSCPCAHN-----SSHSGETRQVGRTTSVTIKNPRYVT 473
           I+T+ NP  V  ISS P  H      ++H+G T   GR T     N  Y+T
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN--YIT 116


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = -2

Query: 420 VFLRSEMNYAHMDSLKFFELRWDWAKSIYNFITRQGYIFTFDIRYMEKYIXXXXXXXXXX 241
           ++L  E+    M ++K    +W W+  + +F+T +    +FD  YM   +          
Sbjct: 100 LYLLDEVQKPSM-TVKAIGRQWFWSYELNDFVTNENEPVSFD-SYM---VPEEDLEEGSL 154

Query: 240 XXFSLQNVLILPVSNGLPKALSDVDAVRFRRV-IIGLGNCKCEFVLLGESSL 88
               + N L+LP+   +   L+  D +    V  +G+  C C    L + SL
Sbjct: 155 RQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGI-KCDCIPSRLNQVSL 205


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 236 GHGFVKLKKGAKIYFSIYLISKVNMYPCLVMKLYI 340
           GHG++ +K     +F+  L + +  Y C++   YI
Sbjct: 10  GHGYILIKPNYPDHFNYRLPADMKFYKCVLTINYI 44


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 14  LTYLLPILDDYQSNLLIMSNDYGFNSD 94
           +TYLL + D +  NLLI  + + F++D
Sbjct: 649 ITYLLGVGDRHLDNLLITKDGHFFHAD 675


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 47  QSNLLIMSNDYGFNSDDSPNKTNSHLQ 127
           QSN  + SN    N   SP+ TN  LQ
Sbjct: 367 QSNAALRSNSLSMNGSLSPSSTNVPLQ 393


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 595 VFFYYDSAQDWSTTHTLHSYIQVYKIRRVFDG 500
           + F  DS+ DWS   TL +    Y +   F+G
Sbjct: 181 ILFTRDSSMDWSCNMTLCNTDYPYLVNTCFNG 212


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 387 CAHNSSHSGETRQVGRTTSVTIKNPRYVTFFVLMQGLLP 503
           C+H+ +++   R+   + +V + NP+ + F V+   LLP
Sbjct: 408 CSHDENYAW-LRKTDDSKAVQLANPKTLEFQVVRSSLLP 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,693
Number of Sequences: 5004
Number of extensions: 59484
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)