Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30215
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 32 0.46
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 30 1.4
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 30 1.4
01_06_1842 - 40278875-40280131 30 1.4
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 29 3.2
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 29 4.3
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 7.5
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 27 9.9
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 232 ERSRICETEKGGEDIFLHISDIEGEYVPLPGDEV--IYRLCPIPPKFEKFQAVH 387
E +I T K + + D EG+ PLPG E+ I+R+ P PP +K+Q H
Sbjct: 318 EEPKIMITGKWNQSMSCQPCDQEGD--PLPGTELKEIWRVAPTPPN-DKYQYTH 368
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 155 NRTASTSERALGNPLETGKIKTFCREKGHGFVKLKKGAKIYFSIYLISKVNMYP 316
N+ ER L TG I +FC +G V KG++ L+ VN YP
Sbjct: 171 NQELVALERELATHRRTGAIDSFCLYL-YGIVLRDKGSEALARTVLVESVNSYP 223
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 155 NRTASTSERALGNPLETGKIKTFCREKGHGFVKLKKGAKIYFSIYLISKVNMYP 316
N+ ER L TG I +FC +G V KG++ L+ VN YP
Sbjct: 42 NQELVALERELATHRRTGAIDSFCLYL-YGIVLRDKGSEALARTVLVESVNSYP 94
>01_06_1842 - 40278875-40280131
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 339 STLPNPT*VRKISSCPCAHNSSHSGETRQVGRTTSV 446
+T P P RK+SS PC+ ++S GET S+
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSR-GETSAAAPPPSI 264
>11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 29.1 bits (62), Expect = 3.2
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +2
Query: 8 SFLTYLLPILDDYQSNLL------IMSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTAS 169
S L YLL + D + NLL I+ D+GF +SP N +P R
Sbjct: 993 SILCYLLQVKDRHNGNLLIDEEGHIIHIDFGFMLSNSPGGVNFE---SAPFKLTRELLEV 1049
Query: 170 TSERALGNPLE-TGKIKTFCREKGHGFVKLKKGAKIYFSIYLISKVNMYPC 319
A G P E K C + GF+ +K A+ + + + + +PC
Sbjct: 1050 MDSDAEGTPSEFFDYFKVLCIQ---GFLTCRKHAERIILLVEMLQDSGFPC 1097
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 340 RLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEPPL*QLRTLDM 468
R+ +P + +K + + + + T + + W+ L QLRTLD+
Sbjct: 712 RITKLPQEIQKLKQLEILYVRSTGIEELPWEIGELKQLRTLDV 754
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 125 QLPSPIITRRNRTASTSERALGNPLETGKI 214
Q+ P +T R R+A++S G P+E+G I
Sbjct: 487 QVSGPPVTNRERSATSSADEHGRPVESGGI 516
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 541 SYIQVYK-IRRVFDGKRPCIKTKKVTYLGFLIVTEVVRPT*RVSPE*DELCAHGQLEIF 368
S + +Y+ + R +R TKK L L+V + + T V E D++ HG E+F
Sbjct: 728 SKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKELF 786
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,419
Number of Sequences: 37544
Number of extensions: 361932
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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