Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55540 Cluster: PREDICTED: similar to collagen a...    50   5e-05
UniRef50_Q6UXH8 Cluster: Collagen and calcium-binding EGF domain...    41   0.022
UniRef50_Q2L228 Cluster: Putative membrane protein precursor; n=...    38   0.27 
UniRef50_UPI0000F2AFA3 Cluster: PREDICTED: similar to mannose-bi...    36   0.82 
UniRef50_Q5YQA9 Cluster: Putative uncharacterized protein; n=4; ...    34   2.5  
UniRef50_Q0IW74 Cluster: Os10g0529400 protein; n=1; Oryza sativa...    33   5.8  

>UniRef50_UPI0000D55540 Cluster: PREDICTED: similar to collagen and
           calcium binding EGF domains 1; n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to collagen and
           calcium binding EGF domains 1 - Tribolium castaneum
          Length = 809

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +1

Query: 37  NYAYRVLDATAPLEG---GYCRCEXXXXXXXXXXXXXXXXX--DTGARGPRDARGPKGSL 201
           +Y Y VLDA  PL G     CRC+                   + G +GPR  +G +GS 
Sbjct: 645 DYTYSVLDAFVPLPGDENAQCRCKRGPQVRGEAGPRGPQGPKGEQGEKGPRGPKGERGSF 704

Query: 202 DLMLXMLADVRHXIQNIE 255
           D +L +LADV+H I +++
Sbjct: 705 DFLLLLLADVKHDIVHLQ 722


>UniRef50_Q6UXH8 Cluster: Collagen and calcium-binding EGF
           domain-containing protein 1 precursor; n=34;
           Euteleostomi|Rep: Collagen and calcium-binding EGF
           domain-containing protein 1 precursor - Homo sapiens
           (Human)
          Length = 406

 Score = 41.1 bits (92), Expect = 0.022
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +1

Query: 151 DTGARGPRDARGPKGSLDLMLXMLADVRHXIQNIE 255
           + GA GPR + GP GS D +L MLAD+R+ I  ++
Sbjct: 319 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQ 353


>UniRef50_Q2L228 Cluster: Putative membrane protein precursor; n=1;
           Bordetella avium 197N|Rep: Putative membrane protein
           precursor - Bordetella avium (strain 197N)
          Length = 95

 Score = 37.5 bits (83), Expect = 0.27
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 427 VRPREDISTGLATDGXVYASXSCSVLLSRSIFSCLRWRRQA 305
           V PR   S GLA  G ++   +C+VLL+ ++ +CL W  +A
Sbjct: 19  VLPRRRRSRGLARRGFLFCCAACAVLLASAVLACLLWMSRA 59


>UniRef50_UPI0000F2AFA3 Cluster: PREDICTED: similar to
           mannose-binding protein A; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to mannose-binding
           protein A - Monodelphis domestica
          Length = 264

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 157 GARGPRDARGPKGSLDLMLXMLADVRHXIQNIERAFTKTXKXXNDSISKRLGAANASRRK 336
           GA GP+  +G KG   + L  L+ +   IQ++ER   K     N+S+ K + A+N   + 
Sbjct: 74  GAPGPKGLKGDKGDSSVSLAKLSTLEGKIQDLERKMEK----INESVLKLVTASNTQIQN 129

Query: 337 LTGTAEPNR 363
           L      N+
Sbjct: 130 LQAQMNRNK 138


>UniRef50_Q5YQA9 Cluster: Putative uncharacterized protein; n=4;
           Actinomycetales|Rep: Putative uncharacterized protein -
           Nocardia farcinica
          Length = 224

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 5   TLC*KTTVAKAITHIEYL--TQRLRWKAGIVDASXDRXDHKDRR 130
           TLC + TV + + H+     T R RW A ++ A  D   H DRR
Sbjct: 37  TLCGRWTVEEVVAHLTAAASTGRFRWIASVLSARFDFDKHNDRR 80


>UniRef50_Q0IW74 Cluster: Os10g0529400 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os10g0529400 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 93

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 629 CTPSRSCSRSHSQFPPHXQSWRSSRSRGTAVASPGPSCR 513
           CTP+ S     S  PP  + WR       +   P PSCR
Sbjct: 30  CTPATSSPAPSSSTPPRRRCWRRGWGASASWMPPRPSCR 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,545,822
Number of Sequences: 1657284
Number of extensions: 10174317
Number of successful extensions: 30073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30054
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)