Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   2.3  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    26   5.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.0  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   9.2  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 297 LQKAWRRQRKQEKIDRDSRTEQXLEAYTXPSVASPVEI 410
           ++K  +   + +++ + S+  + L  Y  PS+ASP ++
Sbjct: 571 VEKLEKLNIRSDEVSKPSKASKTLHGYALPSLASPYDV 608


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 44  HIEYLTQRLRWKAGIVDASXDRXDHKDRRAWRDPKVILEXEDLGTHVVLKXPST 205
           H E +T+ L+WK+ ++ +S D    +  R W D +   +  +   H  L  PST
Sbjct: 305 HYESVTKILQWKSYLISSSLD----QTIRVW-DLEYSADNNEADDHPSLGPPST 353


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 570 LEEFPVTWYCRSLSRAF 520
           +E  PV WYC S S  F
Sbjct: 1   MESQPVIWYCHSCSNEF 17


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 379 VYASXSCSVLLSRSIFSCL 323
           VYA  +C  + + SIFSCL
Sbjct: 319 VYAPTNCGNMYTASIFSCL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,191
Number of Sequences: 5004
Number of extensions: 39343
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)