Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468...    29   3.1  
09_06_0218 - 21636037-21636900                                         28   5.4  
11_01_0391 + 2949070-2950551                                           28   7.2  
02_03_0152 - 15767985-15768317                                         28   7.2  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    27   9.5  

>04_04_0369 -
           24745140-24745510,24746005-24746089,24746746-24746878,
           24747764-24748584
          Length = 469

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 492 LQGHCHLSPLTSQLLNRGVFLPYDLE 415
           LQ H HLS +  QLL  G+ LP DL+
Sbjct: 419 LQQHHHLSTVQQQLLQEGLPLPGDLK 444


>09_06_0218 - 21636037-21636900
          Length = 287

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 160 LQYHLWVPPCPAVLVVPSVXARIDNTR 80
           LQY +W PP P V+ +P V   +   R
Sbjct: 15  LQYQMWPPPPPPVMELPVVFVGVKPVR 41


>11_01_0391 + 2949070-2950551
          Length = 493

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 85  TRLPTEPLRQVLYMRNCLRHRRL 17
           TRLP +P    LY+ NC+  RR+
Sbjct: 161 TRLPRQPYSTYLYIDNCMFGRRI 183


>02_03_0152 - 15767985-15768317
          Length = 110

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 620 SRSCSRSHSQFPPHXQSWRSSRSRGTAVASPGP 522
           SR  +R H+ +PP    W SS     A   P P
Sbjct: 38  SRQSTRRHAPWPPSGGHWSSSEPPLVAAGMPSP 70


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 76  PTEPLRQVLYMRNC 35
           PT+P RQV Y RNC
Sbjct: 466 PTDPTRQVFYGRNC 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,066
Number of Sequences: 37544
Number of extensions: 306368
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)