Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33367| Best HMM Match : PGAMP (HMM E-Value=1.2)                     30   1.8  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   7.4  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             27   9.7  

>SB_33367| Best HMM Match : PGAMP (HMM E-Value=1.2)
          Length = 392

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +3

Query: 396 SPVEISSRGRTGEIRHDS----TTDWSMVKGDNDLED 494
           SP + S++G T   R ++    TTDW+MV GDN  ++
Sbjct: 138 SPQQDSTQGLTHATREETQDMRTTDWAMVVGDNQSKE 174


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 267  KDGXKXERFNLQKAWRRQRKQEKIDRDSRTEQXLEAYTXPSVASPVEISSRGRTGEIRHD 446
            KD    E+ NL  A R  +   +I    +  Q  + Y  P V +PV  +S+GR  + R D
Sbjct: 1402 KDPGCFEQENLVIANRGTQTPFRIKSQKQIPQQKKVYKEPEVQTPVRTTSQGRRAK-RQD 1460

Query: 447  STTDWSMVKGDND 485
              +  S+ + + D
Sbjct: 1461 RDSVCSVTESEVD 1473


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 632 LCTPSRSCSRSHSQFPPHXQSWRSSRSRGTAVASPG 525
           L  P+R+   +H Q  PH Q    SRS G     PG
Sbjct: 743 LTVPARTSVATHQQPRPHTQPSAQSRSYGLPPQQPG 778


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 546  YCRSLSRAFMSSIGPAASLQGHC 478
            YC  LS  F S I P   L G+C
Sbjct: 971  YCTKLSEVFESEIDPVMKLLGYC 993


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 279  KXERFNLQKAWRRQRKQEKIDRDSRTEQXLEAYTXPSVASPVEISSRG 422
            K  +    KAW++Q KQ++I  D    +    ++ P++        RG
Sbjct: 1715 KVRKIYFPKAWKKQSKQQRIKHDYAVLELRRPHSRPTMTVEPSALIRG 1762


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 626 TPSRSCSRSHSQFPPHXQSWRSSRSR 549
           T SRS SR  S+ P   +SW  +RSR
Sbjct: 412 TKSRSRSRIRSRSPARSRSWSHTRSR 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,790,037
Number of Sequences: 59808
Number of extensions: 328569
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)