Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    28   0.066
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    28   0.066
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 552 TWYCRSLSRAFMSSIGPAASLQGHCHLSPLTSQLLNRGVFLP 427
           TW     S   MSS+GP + L     + P T+ L+N G F P
Sbjct: 28  TWLSLDNSNMSMSSVGPQSPLD----MKPDTASLINPGNFSP 65


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 552 TWYCRSLSRAFMSSIGPAASLQGHCHLSPLTSQLLNRGVFLP 427
           TW     S   MSS+GP + L     + P T+ L+N G F P
Sbjct: 28  TWLSLDNSNMSMSSVGPQSPLD----MKPDTASLINPGNFSP 65


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 463 DQSVVESWRISPVRPREDISTGLATDG 383
           D SVV S R SP+ P  +IS    + G
Sbjct: 284 DSSVVGSPRDSPIEPEIEISQNSVSTG 310


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = -1

Query: 412 DISTGLATDGXVYASXSCSVLLSRSIFSCLRWRRQAFWRLNRSXFXP 272
           D+  G   D   Y S      L   ++S   W +   WR+  S F P
Sbjct: 196 DLGKGGCNDAFAYMSDELGYGLI--VYS---WEQNRSWRITHSYFMP 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,581
Number of Sequences: 438
Number of extensions: 2703
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)