Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30210
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    28   4.5  

>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +3

Query: 261 VYKDGXKXERFNLQKAWRRQRKQEKIDRDSRTEQXLEAYTXP----SVASPVEISSRGRT 428
           VYKD    +RF L+K W     + +I          E  T P       SP + S+ G T
Sbjct: 100 VYKDDQVYQRFTLEKKWLLSSVKGEIGLKFYISSSEEDQTFPLPSKPYTSPTQASASG-T 158

Query: 429 GEIRHDSTTDWSM 467
            E   DS T+ S+
Sbjct: 159 EEDTADSETEDSL 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,459
Number of Sequences: 28952
Number of extensions: 225476
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)