Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30209
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.068
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.83 
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.9  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 520 SGWHNSGTRCACXXSWRWTCRSPWARCG-SWGTCSSASTTRSFDAGNASSGSR 675
           +G  N  T   C   + W C  PW   G +W TC+      S  A ++ S SR
Sbjct: 301 NGGCNHMTCKKCKYEFCWVCLGPWTEHGNNWYTCNRYEEKSSTSARDSQSKSR 353


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 407 RPSPSGSTSWTAASYRTCRESPLPSPGTTSRSRARL---RAPGGTIRAHGVPV 556
           +P+P+  +S T  +Y T    P  SPGT S +   L   +AP      +G PV
Sbjct: 687 KPAPTTKSSLTELAYNTNVSLPPRSPGTGSLAAGNLPNEKAPSLMTMVNGGPV 739


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 674 REPELAFPASKLRVVLADEHVPQDPQRAHGLR 579
           RE EL   ASK ++   + HV  DPQ   G++
Sbjct: 80  REKELVVAASKYQIDKTNVHVVSDPQLQDGMQ 111


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 548 HRVPELCHPEHVVVPSSVKSFPAMVKV 468
           HRV  L HP   ++ SS+  FP  + V
Sbjct: 495 HRVQSLYHPSAALMGSSLVEFPMRIVV 521


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 410 PSPSGSTSWTAASYRTCRESPLPS 481
           P PS ST+ T +SYR+   S  P+
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPT 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,832
Number of Sequences: 5004
Number of extensions: 44150
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)