Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30209
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 601  GSWGTCSSASTTRSFDAGNASSGSR 675
            G W T   +ST + +   N   GSR
Sbjct: 1408 GDWDTAQISSTVQKYTLENLLCGSR 1432


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 446 SYRTCRESPLPSPGTTSRSRARLRA 520
           S R+ + +  P PG T   +AR+RA
Sbjct: 374 SGRSQKSTTGPPPGPTPAQKARMRA 398


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 622 SASTTRSFDAGNASSGSR 675
           SAS+T   D  NA SGSR
Sbjct: 575 SASSTCKKDKKNAGSGSR 592


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 611  PQDPQRAHGLRHVQRHEXXQAHRVPELCHPEHVVVPSSVKS 489
            PQ PQ+    +  Q+ +  Q +  P+L H  +  VP+  KS
Sbjct: 1447 PQQPQQQQQQQQQQQQQQQQLNHYPDL-HNLY-AVPTDKKS 1485


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 47  DGILGMAFSTIAVDXVTPVF 106
           +GI GM+ S IAV+    +F
Sbjct: 256 EGIFGMSLSPIAVNGYRTLF 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,969
Number of Sequences: 438
Number of extensions: 4087
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)